Evidence map›Paper›PMID 24736177›Full record

ArticleNeuroImage2014

Common genetic variants and gene expression associated with white matter microstructure in the human brain.

Emma Sprooten, Emma E Knowles, D Reese McKay, Harald H Göring, Joanne E Curran, Jack W Kent, Melanie A Carless, Thomas D Dyer, Eugene I Drigalenko, Rene L Olvera and 6 more

Open access · greenAbstract read
In one paragraph

Article in NeuroImage, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 2 pooled it
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

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  15. Epigenetic Age Acceleration Assessed with Human White-Matter Images.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Emma SprootenDepartment of Psychiatry, Yale University School of Medicine, 300 George Street, New Haven, CT, USA; Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital, 200 Retreat Avenue, CT, USA. Electronic address: emma.sprooten@yale.edu.
Emma E KnowlesDepartment of Psychiatry, Yale University School of Medicine, 300 George Street, New Haven, CT, USA; Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital, 200 Retreat Avenue, CT, USA.
D Reese McKayDepartment of Psychiatry, Yale University School of Medicine, 300 George Street, New Haven, CT, USA; Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital, 200 Retreat Avenue, CT, USA.
Harald H GöringDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Joanne E CurranDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Jack W KentDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Melanie A CarlessDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Thomas D DyerDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Eugene I DrigalenkoDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Rene L OlveraDepartment of Psychiatry, University of Texas Health Science Center San Antonio, 7703 Floyd Curl Drive, San Antonio, TX, USA.
Peter T FoxResearch Imaging Institute, University of Texas Health Science Center San Antonio, 8403 Floyd Curl Drive, San Antonio, TX, USA; South Texas Veterans Health System, 7400 Merton Minter, San Antonio, TX 78229, USA.
Laura AlmasyDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Ravi DuggiralaDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
Peter KochunovMaryland Psychiatric Research Center, Department of Psychiatry, University of Maryland School of Medicine, Baltimore, MD, USA.
John BlangeroDepartment of Genetics, Texas Biomedical Research Institute, PO Box 760549, San Antonio, TX, USA.
David C GlahnDepartment of Psychiatry, Yale University School of Medicine, 300 George Street, New Haven, CT, USA; Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital, 200 Retreat Avenue, CT, USA.
Texas Biomedical Research Institute · USHartford Hospital · USThe University of Texas Health Science Center at San Antonio · USYale University · USUniversity of Maryland, Baltimore · US

Funding

Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
SOLAR-Eclipse Computational Tools for Imaging GeneticsR01EB015611 · NIBIB · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KOCHUNOV, PETER V. · 2012 to 2024
$5.0M
Genetics of Brain Structure and FunctionR01MH078111 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2006 to 2014
$4.5M
Genetics of Brain Structure and FunctionR01MH078143 · NIMH · YALE UNIVERSITY · PI GLAHN, DAVID C · 2006 to 2014
$4.3M
Genetics of Brain Structure and Function: Genome-Wide AssociationR01MH083824 · NIMH · YALE UNIVERSITY · PI GLAHN, DAVID C · 2008 to 2013
$3.3M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
NIBIB NIH HHS EB015611NIBIB NIH HHS R01 EB015611NIMH NIH HHS MH0708143NIMH NIH HHS MH078111NIMH NIH HHS MH083824NIMH NIH HHS MH59490NIMH NIH HHS R01 MH059490NIMH NIH HHS R01 MH078111NIMH NIH HHS R01 MH078143NIMH NIH HHS R01 MH083824NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

Identifying genes that contribute to white matter microstructure should provide insights into the neurobiological processes that regulate white matter development, plasticity and pathology. We detected five significant SNPs using genome-wide association analysis on a global measure of fractional anisotropy in 776 individuals from large extended pedigrees. Genetic correlations and genome-wide association results indicated that the genetic signal was largely homogeneous across white matter regions. Using RNA transcripts derived from lymphocytes in the same individuals, we identified two genes (GNA13 and CCDC91) that are likely to be cis-regulated by top SNPs, and whose expression levels were also genetically correlated with fractional anisotropy. A transcript of HTR7 was phenotypically associated with FA, and was associated with an intronic genome-wide significant SNP. These results encourage further research in the mechanisms by which GNA13, HTR7 and CCDC91 influence brain structure, and emphasize a role for g-protein signaling in the development and maintenance of white matter microstructure in health and disease.

Indexed as

AnisotropyCohort StudiesDiffusion Tensor ImagingGene ExpressionGenetic VariationGenome-Wide Association StudyGenotypeHumansMexican AmericansPolymorphism, Single NucleotideWhite MatterDiffusion tensor imagingExtended pedigreesGene expressionGenome-wide associationTranscriptsWhite matter

Identifiers

PMID24736177
PMCPMC4107465
OpenAlexW1979881437

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.