ArticleBMC genomics2014
Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire.
Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed.
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- T6SS in plant pathogens: unique mechanisms in complex hosts.Infection and immunity · 2024Review
- Clonality and Diversity in the Soft RotInternational journal of molecular sciences · 2023Article
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- Comprehensive Genomic Analysis Reveals Extensive Diversity of Type I and Type IV Secretion Systems in Klebsiella pneumoniae.Current microbiology · 2023Article
- A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.PLoS genetics · 2023Article
- Insight into biodiversity of the recently rearranged genusFrontiers in plant science · 2023Article
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- Genomic Comparisons and Phenotypic Diversity ofFrontiers in plant science · 2022Article
- Early Emergence ofMicroorganisms · 2021Article
- Genomic and Phenotypic Biology of Novel Strains ofFrontiers in plant science · 2021Article
- Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site.PloS one · 2021Article
- Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani.BMC genomics · 2020Article
- Assessment of a Potential Role ofFrontiers in microbiology · 2020Article
- Genome-Wide Identification ofFrontiers in plant science · 2020Article
- Virulence Factor Identification in the Banana Pathogen Dickeya zeae MS2.Applied and environmental microbiology · 2019Article
- Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates.BMC genomics · 2019Article
- Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai.BMC genomics · 2018Article
- Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels.Molecular plant pathology · 2018Article
- Comparison of Highly and Weakly VirulentFrontiers in microbiology · 2018Article
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5 authors.
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Abstract
backgroundThe pectinolytic enterobacteria of the Pectobacterium and Dickeya genera are causative agents of maceration-associated diseases affecting a wide variety of crops and ornamentals. For the past decade, the emergence of a novel species D. solani was observed in potato fields in Europe and the Mediterranean basin. The purpose of this study is to search by comparative genomics the genetic traits that could be distinctive to other Dickeya species and be involved in D. solani adaptation to the potato plant host.
resultsD. solani 3337 exhibits a 4.9 Mb circular genome that is characterized by a low content in mobile elements with the identification of only two full length insertion sequences. A genomic comparison with the deeply-annotated model D. dadantii 3937 strain was performed. While a large majority of Dickeya virulence genes are shared by both strains, a few hundreds genes of D. solani 3337, mostly regrouped in 25 genomic regions, are distinctive to D. dadantii 3937. These genomic regions are present in the other available draft genomes of D. solani strains and interestingly some of them were not found in the sequenced genomes of the other Dickeya species. These genomic regions regroup metabolic genes and are often accompanied by genes involved in transport systems. A metabolic analysis correlated some metabolic genes with distinctive functional traits of both D. solani 3337 and D. dadantii 3937. Three identified D. solani genomic regions also regroup NRPS/PKS encoding genes. In addition, D. solani encodes a distinctive arsenal of T5SS and T6SS-related toxin-antitoxin systems. These genes may contribute to bacteria-bacteria interactions and to the fitness of D. solani to the plant environment.
conclusionsThis study highlights the genomic specific traits of the emerging pathogen D. solani and will provide the basis for studying those that are involved in the successful adaptation of this emerging pathogen to the potato plant host.
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