Evidence map›Paper›PMID 24733297›Full record

ArticlePloS one2014

Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration.

Katarzyna Dziewanowska, Matthew Settles, Samuel Hunter, Ingrid Linquist, Faye Schilkey, Patricia L Hartzell

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Role of DKxanthenes inJournal of microbiology and biotechnology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Katarzyna DziewanowskaDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America.
Matthew SettlesThe Institute for Bioinformatics and Evolutionary Science, University of Idaho, Moscow, Idaho, United States of America.
Samuel HunterBioinformatics and Computational Biology, University of Idaho, Moscow, Idaho, United States of America.
Ingrid LinquistNational Center for Genome Resources, Santa Fe, New Mexico, United States of America.
Faye SchilkeyNational Center for Genome Resources, Santa Fe, New Mexico, United States of America.
Patricia L HartzellDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America.

Funding

NM-INBRE Sequencing and Bioinformatics CoreP20GM103451 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI Charlotte C. Gard · 2012 to 2026
$61.2M
ZUNI HEALTH INITIATIVE-PILOT STUDYP20RR016480 · NCRR · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI ZHANG, PENG F · 2001 to 2011
$33.7M
NCRR NIH HHS P20 RR016480NCRR NIH HHS P20RR016480NIGMS NIH HHS P20 GM103451
6 · The paper itself

Abstract

Myxococcus xanthus undergoes phase variation during growth to produce predominantly two colony phenotypes. The majority are yellow colonies containing swarm-proficient cells and a minority are tan colonies containing swarm-deficient cells. Comparison of the transcriptomes of a yellow variant, a tan variant, and three tan mutants led to the identification of differentially-regulated genes that define key segments of the phase variation pathway. For example, expression of genes for the yellow pigment DKxanthene and the antibiotic myxovirescin was increased significantly in yellow variants. In contrast, expression of the siderophore myxochelin, hemin binding proteins, and iron transport proteins was increased specifically in tan strains. Thus, a consequence of phase variation is that yellow cells shift from producing antibiotic and pigment to producing components involved in acquisition of iron, which may increase fitness during periods of iron limitation. Multiple protein kinases and HTH-Xre DNA-binding proteins identified in this study may be involved in the regulatory hierarchy that governs phase variation.

Indexed as

Bacterial ProteinsBiomarkersCatecholsGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialIronLactonesMutationMyxococcus xanthusPhenotypeSiderophoresSignal TransductionBacterial ProteinsBiomarkersCatecholsIronLactonesSiderophores

Identifiers

PMID24733297
PMCPMC3986340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.