Evidence map›Paper›PMID 24733094›Full record

ArticleInfection and immunity2014

Identification of a diguanylate cyclase and its role in Porphyromonas gingivalis virulence.

Swarnava Chaudhuri, Siddharth Pratap, Victor Paromov, Zhijun Li, Chinmay K Mantri, Hua Xie

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. A novelVirulence · 2025
    Article
  2. cAMP-independent Crp homolog adds to the multi-layer regulatory network inFrontiers in cellular and infection microbiology · 2025
    Article
  3. Article
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  5. Article
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  8. Variability in Genomic and Virulent Properties ofFrontiers in cellular and infection microbiology · 2019
    Article
  9. Cyclic Dinucleotides in Oral Bacteria and in Oral Biofilms.Frontiers in cellular and infection microbiology · 2017
    Article
  10. Article
  11. [Cloning, expression, and purification of c-di-AMP metabolism-related genes from Porphyromonas gingivalis].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2015
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Swarnava ChaudhuriSchool of Dentistry, Meharry Medical College, Nashville, Tennessee, USA.
Siddharth PratapProteomics Core, Department of Microbiology and Immunology, Meharry Medical College, Nashville, Tennessee, USA.
Victor ParomovProteomics Core, Department of Microbiology and Immunology, Meharry Medical College, Nashville, Tennessee, USA.
Zhijun LiDepartment of Chemistry and Biochemistry, University of the Sciences in Philadelphia, Philadelphia, Pennsylvania, USA.
Chinmay K MantriSchool of Dentistry, Meharry Medical College, Nashville, Tennessee, USA.
Hua XieSchool of Dentistry, Meharry Medical College, Nashville, Tennessee, USA hxie@mmc.edu.
Meharry Medical College · USUniversity of the Sciences · US

Funding

The RCMI Program in Health Disparities Research at Meharry Medical College - SupplementU54MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI Maureen Sanderson · 2017 to 2026
$48.2M
Technologies and Resources CoreU54MD007593 · NIMHD · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2012 to 2018
$24.7M
Meharry RCMI Program in Women's Health ResearchG12MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI HILDRETH, JAMES E · 2012 to 2016
$7.8M
Identification of a novel signaling network in Porphyromonas gingivalisR21DE020915 · NIDCR · MEHARRY MEDICAL COLLEGE · PI XIE, HUA · 2011 to 2012
$424k
Distribution correlation of P. gingivalis and S. cristatus in dental plaqueR21DE022428 · NIDCR · MEHARRY MEDICAL COLLEGE · PI XIE, HUA · 2012 to 2013
$408k
NIDCR NIH HHS DE020915NIDCR NIH HHS DE022428NIDCR NIH HHS R21 DE020915NIDCR NIH HHS R21 DE022428NIMHD NIH HHS G12 MD007586NIMHD NIH HHS MD007586NIMHD NIH HHS MD007593NIMHD NIH HHS U54 MD007586NIMHD NIH HHS U54 MD007593
6 · The paper itself

Abstract

Porphyromonas gingivalis is a Gram-negative obligate anaerobic bacterium and is considered a keystone pathogen in the initiation of periodontitis, one of the most widespread infectious diseases. Bacterial bis-(3'-5') cyclic GMP (cyclic di-GMP [c-di-GMP]) serves as a second messenger and is involved in modulating virulence factors in numerous bacteria. However, the role of this second messenger has not been investigated in P. gingivalis, mainly due to a lack of an annotation regarding diguanylate cyclases (DGCs) in this bacterium. Using bioinformatics tools, we found a protein, PGN_1932, containing a GGDEF domain. A deletion mutation in the pgn_1932 gene had a significant effect on the intracellular c-di-GMP level in P. gingivalis. Genetic analysis showed that expression of the fimA and rgpA genes, encoding the major protein subunit of fimbriae and an arginine-specific proteinase, respectively, was downregulated in the pgn_1932 mutant. Correspondingly, FimA protein production and the fimbrial display on the mutant were significantly reduced. Mutations in the pgn_1932 gene also had a significant impact on the adhesive and invasive capabilities of P. gingivalis, which are required for its pathogenicity. These findings provide evidence that the PGN_1932 protein is both responsible for synthesizing c-di-GMP and involved in biofilm formation and host cell invasion by P. gingivalis by controlling the expression and biosynthesis of FimA.

Indexed as

Bacterial AdhesionCell LineComputational BiologyEscherichia coli ProteinsFimbriae ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHumansMutationPhosphorus-Oxygen LyasesPorphyromonas gingivalisVirulencediguanylate cyclaseEscherichia coli ProteinsFimbriae ProteinsPhosphorus-Oxygen Lyases

Identifiers

PMID24733094
PMCPMC4097614
OpenAlexW2114667961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.