Evidence map›Paper›PMID 24732594›Full record

ArticleLeukemia2015

Allele-specific loss and transcription of the miR-15a/16-1 cluster in chronic lymphocytic leukemia.

A Veronese, F Pepe, J Chiacchia, S Pagotto, P Lanuti, S Veschi, M Di Marco, A D'Argenio, I Innocenti, B Vannata and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Leukemia, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Role of microRNAs in Chronic Lymphocytic Leukemia.International journal of molecular sciences · 2023
    Review
  3. Article
  4. Review
  5. Enhanced Expression ofCancers · 2021
    Article
  6. Article
  7. MicroRNAs in Autoimmunity and Hematological Malignancies.International journal of molecular sciences · 2018
    Review
  8. Epigenetics and MicroRNAs in Cancer.International journal of molecular sciences · 2018
    Review
  9. Article
  10. Article
  11. Article
  12. Chronic lymphocytic leukaemia.Nature reviews. Disease primers · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Molecular basis of chronic lymphocytic leukemia diagnosis and prognosis.Cellular oncology (Dordrecht, Netherlands) · 2015
    Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

A Veronese1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
F Pepe1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
J ChiacchiaUnit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy.
S Pagotto1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
P LanutiDepartment of Medicine and Aging Science, University G. d'Annunzio Chieti-Pescara, Chieti, Italy.
S Veschi1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
M Di MarcoDepartment of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
A D'ArgenioUnit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy.
I InnocentiDepartment of Hematology, Catholic University of the Sacred Heart, Rome, Italy.
B VannataDepartment of Hematology, Catholic University of the Sacred Heart, Rome, Italy.
F AutoreDepartment of Hematology, Catholic University of the Sacred Heart, Rome, Italy.
M MarchisioDepartment of Medicine and Aging Science, University G. d'Annunzio Chieti-Pescara, Chieti, Italy.
D WernickeDepartment of Molecular Virology, Immunology, and Medical Genetics and Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.
F VerginelliUnit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy.
G LeoneDepartment of Hematology, Catholic University of the Sacred Heart, Rome, Italy.
L Z Rassenti1] Department of Medicine, Moores Cancer Center, University of California at San Diego, La Jolla, CA, USA [2] Chronic Lymphocytic Leukemia Research Consortium, San Diego, CA, USA.
T J Kipps1] Department of Medicine, Moores Cancer Center, University of California at San Diego, La Jolla, CA, USA [2] Chronic Lymphocytic Leukemia Research Consortium, San Diego, CA, USA.
R Mariani-Costantini1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
L LaurentiDepartment of Hematology, Catholic University of the Sacred Heart, Rome, Italy.
C M Croce1] Department of Molecular Virology, Immunology, and Medical Genetics and Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA [2] Chronic Lymphocytic Leukemia Research Consortium, San Diego, CA, USA.
R Visone1] Unit of General Pathology, Aging Research Center (Ce.S.I.), G. d'Annunzio University Foundation, Chieti, Italy [2] Department of Medical, Oral and Biotechnological Sciences, G. d'Annunzio University, Chieti, Italy.
University of Chieti-Pescara · ITUniversità Cattolica del Sacro Cuore · ITUniversity of California San Diego · USCancer Genetics (United States) · USThe Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Tissue CoreP01CA081534 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KIPPS, THOMAS J · 2000 to 2016
$59.5M
TOWARD AN UNDERSTANDING OF CLL PROGRESSIONR01CA151319 · NCI · OHIO STATE UNIVERSITY · PI CROCE, CARLO M · 2011 to 2015
$1.5M
Novel pharmacologic agents in CLLP20CA081534 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KIPPS, THOMAS J. · 1999 to 1999
–
NCI NIH HHS P01 CA081534NCI NIH HHS P20 CA081534NCI NIH HHS P30 CA016058NCI NIH HHS R01 CA151319
6 · The paper itself

Abstract

Deregulation of the miR-15a/16-1 cluster has a key role in the pathogenesis of chronic lymphocytic leukemia (CLL), a clinically heterogeneous disease with indolent and aggressive forms. The miR-15a/16-1 locus is located at 13q14, the most frequently deleted region in CLL. Starting from functional investigations of a rare SNP upstream the miR cluster, we identified a novel allele-specific mechanism that exploits a cryptic activator region to recruit the RNA polymerase III for miR-15a/16-1 transcription. This regulation of the miR-15a/16- locus is independent of the DLEU2 host gene, which is often transcribed monoallellically by RPII. We found that normally one allele of miR-15a/16-1 is transcribed by RNAPII, the other one by RNAPIII. In our subset of CLL patients harboring 13q14 deletions, exclusive RNA polymerase III (RPIII)-driven transcription of the miR-15a/16-1 was the consequence of loss of the RPII-regulated allele and correlated with high expression of the poor prognostic marker ZAP70 (P=0.019). Thus, our findings point to a novel biological process, characterized by double allele-specific transcriptional regulation of the miR-15a/16-1 locus by alternative mechanisms. Differential usage of these mechanisms may distinguish at onset aggressive from indolent forms of CLL. This provides a basis for the clinical heterogeneity of the CLL patients carrying 13q14 deletions.

Indexed as

AllelesTranscription, GeneticBase SequenceBiomarkers, TumorCell Line, TumorChromatin ImmunoprecipitationDNADNA Copy Number VariationsHumansLeukemia, Lymphocytic, Chronic, B-CellMicroRNAsMolecular Sequence DataPolymorphism, Single NucleotideReal-Time Polymerase Chain ReactionBiomarkers, TumorDNAMicroRNAsMIRN15 microRNA, humanMIRN16 microRNA, human

Identifiers

PMID24732594
PMCPMC4198514
OpenAlexW1988567557

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.