Evidence map›Paper›PMID 24731704›Full record

ArticleBMC biology2014

Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs.

Vladimir A Timoshevskiy, Nicholas A Kinney, Becky S deBruyn, Chunhong Mao, Zhijian Tu, David W Severson, Igor V Sharakhov, Maria V Sharakhova

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vladimir A Timoshevskiy
Nicholas A Kinney
Becky S deBruyn
Chunhong Mao
Zhijian Tu
David W Severson
Igor V Sharakhov
Maria V SharakhovaDepartment of Entomology, Fralin Life Science Institute, Virginia Tech, Blacksburg, VA, USA. msharakh@vt.edu.
Virginia Tech · USUniversity of Notre Dame · US

Funding

Physical mapping of Aedes aegypti genomeR21AI088035 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SHARAKHOVA, MARIA · 2010 to 2011
$433k
NIAID NIH HHS R21 AI088035
6 · The paper itself

Abstract

backgroundAn initial comparative genomic study of the malaria vector Anopheles gambiae and the yellow fever mosquito Aedes aegypti revealed striking differences in the genome assembly size and in the abundance of transposable elements between the two species. However, the chromosome arms homology between An. gambiae and Ae. aegypti, as well as the distribution of genes and repetitive elements in chromosomes of Ae. aegypti, remained largely unexplored because of the lack of a detailed physical genome map for the yellow fever mosquito.

resultsUsing a molecular landmark-guided fluorescent in situ hybridization approach, we mapped 624 Mb of the Ae. aegypti genome to mitotic chromosomes. We used this map to analyze the distribution of genes, tandem repeats and transposable elements along the chromosomes and to explore the patterns of chromosome homology and rearrangements between Ae. aegypti and An. gambiae. The study demonstrated that the q arm of the sex-determining chromosome 1 had the lowest gene content and the highest density of minisatellites. A comparative genomic analysis with An. gambiae determined that the previously proposed whole-arm synteny is not fully preserved; a number of pericentric inversions have occurred between the two species. The sex-determining chromosome 1 had a higher rate of genome rearrangements than observed in autosomes 2 and 3 of Ae. aegypti.

conclusionsThe study developed a physical map of 45% of the Ae. aegypti genome and provided new insights into genomic composition and evolution of Ae. aegypti chromosomes. Our data suggest that minisatellites rather than transposable elements played a major role in rapid evolution of chromosome 1 in the Aedes lineage. The research tools and information generated by this study contribute to a more complete understanding of the genome organization and evolution in mosquitoes.

Indexed as

Evolution, MolecularAedesAnimalsAnophelesBase CompositionChromosomes, Artificial, BacterialChromosomes, InsectContig MappingDNA Transposable ElementsGene OrderGene RearrangementGenes, InsectGenome, InsectIn Situ Hybridization, FluorescenceMicrosatellite RepeatsPhysical Chromosome MappingDNA Transposable Elements

Identifiers

PMID24731704
PMCPMC4021624
OpenAlexW2079284450

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.