Evidence map›Paper›PMID 24730561›Full record

ArticleAlcoholism, clinical and experimental research2014

Methylation and gene expression responses to ethanol feeding and betaine supplementation in the cystathionine beta synthase-deficient mouse.

Valentina Medici, Diane I Schroeder, Rima Woods, Janine M LaSalle, Yongzhi Geng, Noreene M Shibata, Janet Peerson, Emir Hodzic, Sanjana Dayal, Hidekazu Tsukamoto and 4 more

Open access · greenAbstract read
In one paragraph

Article in Alcoholism, clinical and experimental research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Metabolomics Reveals Metabolic Changes Caused by Low-Dose 4-Tert-Octylphenol in Mice Liver.International journal of environmental research and public health · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Changes in Methionine Metabolism and Histone H3 Trimethylation Are Linked to Mitochondrial Defects in Multiple Sclerosis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Valentina MediciDepartment of Internal Medicine, University of California Davis, Sacramento, California.
Diane I Schroeder
Rima Woods
Janine M LaSalle
Yongzhi Geng
Noreene M Shibata
Janet Peerson
Emir Hodzic
Sanjana Dayal
Hidekazu Tsukamoto
Kusum K Kharbanda
Brittany Tillman
Samuel W French
Charles H Halsted
University of California, Davis · USUCLA Medical Center · USSouthern California Reproductive Center · USUniversity of Iowa · USVA Nebraska Western Iowa Health Care System · US

Funding

The Southernearch Center for ALPD and CirrhosisP50AA011999 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ANNA S. GUKOVSKAYA · 1999 to 2026
$45.8M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JACQUELYN J. MAHER · 1986 to 2026
$30.7M
Methylomic and genomic impacts of organic pollutants in Dup15q syndromeR01ES021707 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LASALLE, JANINE M · 2012 to 2016
$1.8M
Wilson Disease: Regulation of Steatosis by Methionine MetabolismK08DK084111 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MEDICI, VALENTINA · 2010 to 2014
$765k
Epigenetic regulation of alcoholic steatohepatitis in a mouse modelR03AA020577 · NIAAA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HALSTED, CHARLES HOPKINSON · 2011 to 2012
$154k
Effect of Alcohol on Hepatic Creatine Biosynthesis: Role of Defective MethylationI01BX001155 · VA · OMAHA VA MEDICAL CENTER · PI KHARBANDA, KUSUM K. · 2012 to 2015
–
BLRD VA I01 BX001155NIAAA NIH HHS P50 AA011999NIAAA NIH HHS P50AA11991NIAAA NIH HHS R03 AA020577NIAAA NIH HHS R03AA020577-01NIDDK NIH HHS K08 DK084111NIDDK NIH HHS K08DK084111NIDDK NIH HHS P30 DK026743NIEHS NIH HHS R01 ES021707NIEHS NIH HHS R01ES021707
6 · The paper itself

Abstract

backgroundAlcoholic steatohepatitis (ASH) is caused in part by the effects of ethanol (EtOH) on hepatic methionine metabolism.

methodsTo investigate the phenotypic and epigenetic consequences of altered methionine metabolism in this disease, we studied the effects of 4-week intragastric EtOH feeding with and without the methyl donor betaine in cystathionine beta synthase (CβS) heterozygous C57BL/6J mice.

resultsThe histopathology of early ASH was induced by EtOH feeding and prevented by betaine supplementation, while EtOH feeding reduced and betaine supplementation maintained the hepatic methylation ratio of the universal methyl donor S-adenosylmethionine (SAM) to the methyltransferase inhibitor S-adenosylhomocysteine (SAH). MethylC-seq genomic sequencing of heterozygous liver samples from each diet group found 2 to 4% reduced methylation in gene bodies, but not promoter regions of all autosomes of EtOH-fed mice, each of which were normalized in samples from mice fed the betaine-supplemented diet. The transcript levels of nitric oxide synthase (Nos2) and DNA methyltransferase 1 (Dnmt1) were increased, while those of peroxisome proliferator receptor-α (Pparα) were reduced in EtOH-fed mice, and each was normalized in mice fed the betaine-supplemented diet. DNA pyrosequencing of CβS heterozygous samples found reduced methylation in a gene body of Nos2 by EtOH feeding that was restored by betaine supplementation and was correlated inversely with its expression and positively with SAM/SAH ratios.

conclusionsThe present study has demonstrated relationships among EtOH induction of ASH with aberrant methionine metabolism that was associated with gene body DNA hypomethylation in all autosomes and was prevented by betaine supplementation. The data imply that EtOH-induced changes in selected gene transcript levels and hypomethylation in gene bodies during the induction of ASH are a result of altered methionine metabolism that can be reversed through dietary supplementation of methyl donors.

Indexed as

AnimalsBetaineDietary SupplementsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA MethylationEthanolFatty Liver, AlcoholicGene Expression RegulationHomocystinuriaLiverMethionineMiceMice, Inbred C57BLNitric Oxide Synthase Type IIPPAR alphaBetaineDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDnmt1 protein, mouseDnmt1 protein, ratEthanolMethionineNitric Oxide Synthase Type IINos2 protein, ratPPAR alphaS-AdenosylhomocysteineS-AdenosylmethionineAlcoholCystathionine Beta SynthaseDNA MethylationS-AdenosylhomocysteineS-Adenosylmethionine

Identifiers

PMID24730561
PMCPMC4047166
OpenAlexW2004985129

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.