Evidence map›Paper›PMID 24729971›Full record

ArticleBioMed research international2014

Identifying gastric cancer related genes using the shortest path algorithm and protein-protein interaction network.

Yang Jiang, Yang Shu, Ying Shi, Li-Peng Li, Fei Yuan, Hui Ren

Abstract read
In one paragraph

Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yang JiangColorectal Surgery Department, China-Japan Union Hospital of Jilin University, Changchun 130033, China.ORCID 0000-0002-1901-9778
Yang ShuState Key Laboratory of Medical Genomics, Institute of Health Sciences, Chinese Academy of Sciences, Shanghai Jiao Tong University School of Medicine and Shanghai Institutes for Biological Sciences, Shanghai 200025, China.ORCID 0000-0002-8304-1531
Ying ShiBreast and Thyroid Surgery Department, The Second Hospital of Jilin University, Changchun 130041, China.
Li-Peng LiColorectal Surgery Department, China-Japan Union Hospital of Jilin University, Changchun 130033, China.
Fei YuanState Key Laboratory of Medical Genomics, Institute of Health Sciences, Chinese Academy of Sciences, Shanghai Jiao Tong University School of Medicine and Shanghai Institutes for Biological Sciences, Shanghai 200025, China.ORCID 0000-0002-9681-6367
Hui RenColorectal Surgery Department, The Second Hospital of Jilin University, Changchun 130041, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastric cancer, as one of the leading causes of cancer related deaths worldwide, causes about 800,000 deaths per year. Up to now, the mechanism underlying this disease is still not totally uncovered. Identification of related genes of this disease is an important step which can help to understand the mechanism underlying this disease, thereby designing effective treatments. In this study, some novel gastric cancer related genes were discovered based on the knowledge of known gastric cancer related ones. These genes were searched by applying the shortest path algorithm in protein-protein interaction network. The analysis results suggest that some of them are indeed involved in the biological process of gastric cancer, which indicates that they are the actual gastric cancer related genes with high probability. It is hopeful that the findings in this study may help promote the study of this disease and the methods can provide new insights to study various diseases.

Indexed as

AlgorithmsDatabases, ProteinModels, BiologicalSignal TransductionComputer SimulationData MiningHumansNeoplasm ProteinsProtein Interaction MappingStomach NeoplasmsNeoplasm Proteins

Identifiers

PMID24729971
PMCPMC3963223

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.