Evidence map›Paper›PMID 24729610›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2014

ATM increases activation-induced cytidine deaminase activity at downstream S regions during class-switch recombination.

Lyne Khair, Jeroen E J Guikema, Erin K Linehan, Anna J Ucher, Niek G J Leus, Colin Ogilvie, Zhenkun Lou, Carol E Schrader, Janet Stavnezer

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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  13. IgH chain class switch recombination: mechanism and regulation.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lyne KhairDepartment of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA 01605.
Jeroen E J Guikema
Erin K Linehan
Anna J Ucher
Niek G J Leus
Colin Ogilvie
Zhenkun Lou
Carol E Schrader
Janet Stavnezer
University of Massachusetts Chan Medical School · USMayo Clinic · US

Funding

MOLECULAR BASIS OF IMMUNOGLOBULIN HEAVY CHAIN SWITCHR01AI023283 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 1985 to 2014
$5.8M
Ubiquitination and the DNA Damage Response PathwayR01CA130996 · NCI · MAYO CLINIC ROCHESTER · PI LOU, ZHENKUN · 2008 to 2018
$3.3M
Regultion of p53 DeubiquitinationR01CA148940 · NCI · MAYO CLINIC ROCHESTER · PI LOU, ZHENKUN · 2011 to 2015
$1.6M
c-myc DNA breaks and c-myc-IgH locus translocations: roles of AID and oxidationR21AI088578 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STAVNEZER, JANET M. · 2010 to 2011
$450k
Function of the AID C terminus in Ig class switchingR21AI099988 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 2012 to 2013
$443k
AP Endonuclease 2 in hematopoietic stem cell maintenanceR03AI092528 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 2011 to 2012
$165k
NCI NIH HHS R01 CA130996NCI NIH HHS R01 CA148940NIAID NIH HHS R01 AI023283NIAID NIH HHS R01-AI023283NIAID NIH HHS R03 AI092528NIAID NIH HHS R03-AI092528NIAID NIH HHS R21 AI088578NIAID NIH HHS R21-AI088578NIAID NIH HHS R21 AI099988
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) initiates Ab class-switch recombination (CSR) in activated B cells resulting in exchanging the IgH C region and improved Ab effector function. During CSR, AID instigates DNA double-strand break (DSB) formation in switch (S) regions located upstream of C region genes. DSBs are necessary for CSR, but improper regulation of DSBs can lead to chromosomal translocations that can result in B cell lymphoma. The protein kinase ataxia telangiectasia mutated (ATM) is an important proximal regulator of the DNA damage response (DDR), and translocations involving S regions are increased in its absence. ATM phosphorylates H2AX, which recruits other DNA damage response (DDR) proteins, including mediator of DNA damage checkpoint 1 (Mdc1) and p53 binding protein 1 (53BP1), to sites of DNA damage. As these DDR proteins all function to promote repair and recombination of DSBs during CSR, we examined whether mouse splenic B cells deficient in these proteins would show alterations in S region DSBs when undergoing CSR. We find that in atm(-/-) cells Sμ DSBs are increased, whereas DSBs in downstream Sγ regions are decreased. We also find that mutations in the unrearranged Sγ3 segment are reduced in atm(-/-) cells. Our data suggest that ATM increases AID targeting and activity at downstream acceptor S regions during CSR and that in atm(-/-) cells Sμ DSBs accumulate as they lack a recombination partner.

Indexed as

Adaptor Proteins, Signal TransducingAICDA (Activation-Induced Cytidine Deaminase)AnimalsAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCytidine DeaminaseDNA-Binding ProteinsDNA DamageGene Rearrangement, B-LymphocyteHistonesIntracellular Signaling Peptides and ProteinsMiceMice, KnockoutPhosphorylationTumor Suppressor p53-Binding Protein 1Adaptor Proteins, Signal TransducingAICDA (Activation-Induced Cytidine Deaminase)Ataxia Telangiectasia Mutated ProteinsAtm protein, mouseCell Cycle ProteinsChromosomal Proteins, Non-HistoneCytidine DeaminaseDNA-Binding Proteinsgamma-H2AX protein, mouseHistonesIntracellular Signaling Peptides and ProteinsMDC1 protein, mouseTrp53bp1 protein, mouseTumor Suppressor p53-Binding Protein 1

Identifiers

PMID24729610
PMCPMC4049217
OpenAlexW2122117713

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.