Evidence map›Paper›PMID 24729604›Full record

ArticleThe Journal of antimicrobial chemotherapy2014

HIV-1 drug mutations in children from northern Tanzania.

Elichilia R Shao, Emmanuel G Kifaro, Innocent B Chilumba, Balthazar M Nyombi, Sikhulile Moyo, Simani Gaseitsiwe, Rosemary Musonda, Asgeir Johannessen, Gibson Kibiki, Max Essex

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Elichilia R ShaoKilimanjaro Christian Medical Center, Moshi, Tanzania Kilimanjaro Christian Medical University College, Moshi, Tanzania Kilimanjaro Clinical Research Institute, Moshi, Tanzania elichilia2004@yahoo.co.uk.
Emmanuel G KifaroKilimanjaro Christian Medical Center, Moshi, Tanzania.
Innocent B ChilumbaKilimanjaro Christian Medical Center, Moshi, Tanzania.
Balthazar M NyombiKilimanjaro Christian Medical Center, Moshi, Tanzania Kilimanjaro Christian Medical University College, Moshi, Tanzania Kilimanjaro Clinical Research Institute, Moshi, Tanzania.
Sikhulile MoyoBotswana Harvard HIV Research Laboratory, Gaborone, Botswana.
Simani GaseitsiweBotswana Harvard HIV Research Laboratory, Gaborone, Botswana.
Rosemary MusondaBotswana Harvard HIV Research Laboratory, Gaborone, Botswana.
Asgeir JohannessenVestre Viken HF Drammen Hospital, Drammen, Norway.
Gibson KibikiKilimanjaro Christian Medical Center, Moshi, Tanzania Kilimanjaro Christian Medical University College, Moshi, Tanzania Kilimanjaro Clinical Research Institute, Moshi, Tanzania.
Max EssexBotswana Harvard HIV Research Laboratory, Gaborone, Botswana.
Kilimanjaro Christian Medical Centre · TZBotswana Harvard AIDS Institute Partnership · BWDrammen Hospital · NO

Funding

Training in HIV Genomics, Treatment, and Cure Research in BotswanaD43TW009610 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI SHAHIN LOCKMAN, Joseph Moeketsi Makhema · 2013 to 2026
$4.4M
FIC NIH HHS D43 TW009610Wellcome Trust 087540
6 · The paper itself

Abstract

objectivesIn resource-limited settings, it is a challenge to get quality clinical specimens due to poor infrastructure for their collection, transportation, processing and storage. Using dried blood spots (DBS) might be an alternative to plasma for HIV-1 drug resistance testing in this setting. The objectives of this study were to determine mutations associated with antiretroviral resistance among children <18 months old born to HIV-1-infected mothers enrolled in prevention of mother-to-child transmission services in northern Tanzania. PATIENTS AND

methodsKilimanjaro Christian Medical Center (KCMC) Clinical Laboratory is the zonal centre for early infant diagnosis using DBS in northern Tanzania. DBS were collected from January 2011 to December 2012. Mothers were kept on triple therapy and single-dose nevirapine before pregnancy and during labour, respectively. Infants were given single-dose nevirapine and most of them were breastfed. Genotypic resistance was determined in those with a viral load of >400 copies/mL.

resultsGenotypic resistance mutations were detected in 13 of 46 children (28%). HIV-1 genotypes were A1 (n = 27), C (n = 10), A/D (n = 4), D (n = 3) and CRF10_CD (n = 2). The median age was 12 weeks (IQR 6-28). The mean log10 viral load was 3.87 copies/mL (SD 0.995). All major mutations were detected in the reverse transcriptase gene and none in the protease gene region. The most frequent mutations were Y181C (n = 8) and K103N (n = 4), conferring resistance to non-nucleoside reverse transcriptase inhibitors.

conclusionsOne-third of infants newly diagnosed with HIV in northern Tanzania harboured major drug resistance mutations to currently used antiretroviral regimens. These mutations were detected from DBS collected from the field and stored at room temperature. Surveillance of drug resistance among this population in resource-limited settings is warranted.

Indexed as

Drug Resistance, ViralMutation, MissenseAnti-HIV AgentsFemaleGenotypeHIV-1HIV InfectionsHumansInfantMaleMolecular Sequence DataPregnancySequence Analysis, DNATanzaniaAnti-HIV Agentsantiretroviral therapychilddried blood spotsearly infant diagnosismutationssub-Saharan Africa

Identifiers

PMID24729604
PMCPMC4054989
OpenAlexW2152129369

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.