Evidence map›Paper›PMID 24728986›Full record

ArticleNucleic acids research2014

A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein.

Zhuo Li, Richard Y-C Huang, Daniel C Yopp, Travis H Hileman, Thomas J Santangelo, Jerard Hurwitz, Jeffrey W Hudgens, Zvi Kelman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Sliding Clamps as Therapeutic Targets.Frontiers in molecular biosciences · 2018
    Review
  4. Article
  5. Article
  6. Genome Replication inFrontiers in microbiology · 2017
    Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Zhuo LiInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Richard Y-C HuangInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Drive, Rockville, MD 20850, USA National Institute of Standards and Technology, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Daniel C YoppDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Travis H HilemanDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Thomas J SantangeloDepartment of Microbiology and Center for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Jerard HurwitzProgram of Molecular Biology, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.
Jeffrey W HudgensInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Drive, Rockville, MD 20850, USA National Institute of Standards and Technology, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Zvi KelmanInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Drive, Rockville, MD 20850, USA National Institute of Standards and Technology, 9600 Gudelsky Drive, Rockville, MD 20850, USA zkelman@umd.edu.
The Ohio State University · USInstitute for Bioscience and Biotechnology ResearchUniversity of Maryland, College Park · USMemorial Sloan Kettering Cancer Center · US

Funding

Mechanisms of Archaeal Transcription Termination - Administrative SupplementR01GM100329 · NIGMS · OHIO STATE UNIVERSITY · PI SANTANGELO, THOMAS JAMES · 2012 to 2021
$2.5M
A Model Archaeal System: Genetic Tools and Resources for T. kodakarensisR24GM098176 · NIGMS · OHIO STATE UNIVERSITY · PI REEVE, JOHN NEWTON · 2011 to 2014
$1.2M
CGH CDC HHS GH034559Intramural NIH HHSNIGMS NIH HHS GM098176NIGMS NIH HHS GM100329NIGMS NIH HHS R01 GM100329
6 · The paper itself

Abstract

Proliferating cell nuclear antigen (PCNA) forms a trimeric ring that associates with and influences the activity of many proteins participating in DNA metabolic processes and cell cycle progression. Previously, an uncharacterized small protein, encoded by TK0808 in the archaeon Thermococcus kodakarensis, was shown to stably interact with PCNA in vivo. Here, we show that this protein, designated Thermococcales inhibitor of PCNA (TIP), binds to PCNA in vitro and inhibits PCNA-dependent activities likely by preventing PCNA trimerization. Using hydrogen/deuterium exchange mass spectrometry and site-directed mutagenesis, the interacting regions of PCNA and TIP were identified. Most proteins bind to PCNA via a PCNA-interacting peptide (PIP) motif that interacts with the inter domain connecting loop (IDCL) on PCNA. TIP, however, lacks any known PCNA-interacting motif, suggesting a new mechanism for PCNA binding and regulation of PCNA-dependent activities, which may support the development of a new subclass of therapeutic biomolecules for inhibiting PCNA.

Indexed as

Amino Acid SubstitutionArchaeal ProteinsDeuterium Exchange MeasurementDNA Polymerase IIFlap EndonucleasesKineticsMicrobial ViabilityModels, MolecularMutagenesis, Site-DirectedProliferating Cell Nuclear AntigenProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationThermococcusArchaeal ProteinsDNA Polymerase IIFlap EndonucleasesProliferating Cell Nuclear Antigen

Identifiers

PMID24728986
PMCPMC4027161
OpenAlexW2115229645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.