Evidence map›Paper›PMID 24728527›Full record

ArticlePloS one2014

Metabolomic analysis of cooperative adaptation between co-cultured Bacillus cereus and Ketogulonicigenium vulgare.

Ming-Zhu Ding, Yang Zou, Hao Song, Ying-Jin Yuan

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. High-Throughput Screening of a 2-Keto-L-Gulonic Acid-ProducingFrontiers in bioengineering and biotechnology · 2019
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ming-Zhu DingKey Laboratory of Systems Bioengineering, Ministry of Education (Tianjin University), Tianjin, PR China; School of Chemical Engineering and Technology, Tianjin University, Tianjin, PR China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, PR China.
Yang ZouKey Laboratory of Systems Bioengineering, Ministry of Education (Tianjin University), Tianjin, PR China; School of Chemical Engineering and Technology, Tianjin University, Tianjin, PR China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, PR China.
Hao SongKey Laboratory of Systems Bioengineering, Ministry of Education (Tianjin University), Tianjin, PR China; School of Chemical Engineering and Technology, Tianjin University, Tianjin, PR China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, PR China.
Ying-Jin YuanKey Laboratory of Systems Bioengineering, Ministry of Education (Tianjin University), Tianjin, PR China; School of Chemical Engineering and Technology, Tianjin University, Tianjin, PR China; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, PR China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cooperative adaptation of subcultivated Bacillus cereus and Ketogulonicigenium vulgare significantly increased the productivity of 2-keto-L-gulonic acid, the precursor of vitamin C. The mechanism of cooperative adaptation of the serial subcultivated B. cereus and K. vulgare was investigated in this study by culturing the two strains orthogonally on agar plates. It was found that the swarming distance of B. cereus along the trace of K. vulgare on the plate decreased after 150 days' subcultivation. Metabolomic analysis on these co-cultured B. cereus and K. vulgare strains showed that their cooperative adaptation was accomplished by three key events: (i) the ability of nutrients (e.g., amino acids and purines) searching and intaking, and proteins biosynthesis is increased in the evolved B. cereus; (ii) the capability of protein degradation and amino acids transportation is enhanced in evolved K. vulgare; (iii) the evolved B. cereus was found to provide more nutrients (mostly amino acids and purines) to K. vulgare, thus strengthening the oxidation and energy generation of K. vulgare. Our results provided novel insights into the systems-level understanding of the cooperative adaptation between strains in synergistic consortium.

Indexed as

MetabolomeMetabolomicsBacillus cereusBiosynthetic PathwaysCoculture TechniquesModels, BiologicalNucleosidesOxidation-ReductionPurinesRhodobacteraceaeStress, PhysiologicalNucleosidesPurines

Identifiers

PMID24728527
PMCPMC3984275

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.