Evidence map›Paper›PMID 24728133›Full record

ArticlePloS one2014

Quantitative analysis of dynamic association in live biological fluorescent samples.

Pekka Ruusuvuori, Lassi Paavolainen, Kalle Rutanen, Anita Mäki, Heikki Huttunen, Varpu Marjomäki

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Pekka RuusuvuoriDepartment of Signal Processing, Tampere University of Technology, Tampere, Finland; Department of Biological and Environmental Science/Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Lassi PaavolainenDepartment of Biological and Environmental Science/Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland; Department of Mathematical Information Technology, University of Jyväskylä, Jyväskylä, Finland.
Kalle RutanenDepartment of Signal Processing, Tampere University of Technology, Tampere, Finland; Department of Mathematics, Tampere University of Technology, Tampere, Finland.
Anita MäkiDepartment of Biological and Environmental Science/Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Heikki HuttunenDepartment of Signal Processing, Tampere University of Technology, Tampere, Finland.
Varpu MarjomäkiDepartment of Biological and Environmental Science/Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Determining vesicle localization and association in live microscopy may be challenging due to non-simultaneous imaging of rapidly moving objects with two excitation channels. Besides errors due to movement of objects, imaging may also introduce shifting between the image channels, and traditional colocalization methods cannot handle such situations. Our approach to quantifying the association between tagged proteins is to use an object-based method where the exact match of object locations is not assumed. Point-pattern matching provides a measure of correspondence between two point-sets under various changes between the sets. Thus, it can be used for robust quantitative analysis of vesicle association between image channels. Results for a large set of synthetic images shows that the novel association method based on point-pattern matching demonstrates robust capability to detect association of closely located vesicles in live cell-microscopy where traditional colocalization methods fail to produce results. In addition, the method outperforms compared Iterated Closest Points registration method. Results for fixed and live experimental data shows the association method to perform comparably to traditional methods in colocalization studies for fixed cells and to perform favorably in association studies for live cells.

Indexed as

Cell Line, TumorCell SurvivalComputer SimulationCytoplasmic VesiclesFluorescenceHumansMicroscopyMolecular ImagingTime-Lapse Imaging

Identifiers

PMID24728133
PMCPMC3984138

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.