Evidence map›Paper›PMID 24727420›Full record

ArticleMolecules (Basel, Switzerland)2014

Inhibition and biochemical characterization of methicillin-resistant Staphylococcus aureus shikimate dehydrogenase: an in silico and kinetic study.

Claudia Avitia-Domínguez, Erick Sierra-Campos, José Manuel Salas-Pacheco, Hugo Nájera, Arturo Rojo-Domínguez, Jorge Cisneros-Martínez, Alfredo Téllez-Valencia

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Determination of Potential Inhibitors againstCurrent pharmaceutical design · 2026
    Review
  2. Article
  3. Article
  4. Identification of potential inhibitors againstJournal of enzyme inhibition and medicinal chemistry · 2024
    Article
  5. Deletion Mutants ofPathogens (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Molecules (Basel, Switzerland) · 2020
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Claudia Avitia-DomínguezFacultad de Medicina y Nutrición, Universidad Juárez del Estado de Durango, Av. Universidad y Fanny Anitúa S/N, Durango, Durango, C.P. 34000, Mexico.
Erick Sierra-CamposFacultad de Ciencias Químicas, Universidad Juárez del Estado de Durango, Av. Artículo 123 S/N Fracc. Filadelfia, Gómez Palacio, Durango, CP. 35010, Mexico. ericksier@ujed.mx.
José Manuel Salas-PachecoInstituto de Investigación Científica, Universidad Juárez del Estado de Durango, Av. Universidad S/N., Durango, Durango, C.P. 34000, Mexico.
Hugo NájeraDepartamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Unidad Cuajimalpa. Av. Vasco de Quiroga 4871, Colonia Santa Fe Cuajimalpa, Delegación Cuajimalpa de Morelos, Distrito Federal, C.P. 05300, Mexico.
Arturo Rojo-DomínguezDepartamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Unidad Cuajimalpa. Av. Vasco de Quiroga 4871, Colonia Santa Fe Cuajimalpa, Delegación Cuajimalpa de Morelos, Distrito Federal, C.P. 05300, Mexico.
Jorge Cisneros-MartínezFacultad de Medicina y Nutrición, Universidad Juárez del Estado de Durango, Av. Universidad y Fanny Anitúa S/N, Durango, Durango, C.P. 34000, Mexico.
Alfredo Téllez-ValenciaFacultad de Medicina y Nutrición, Universidad Juárez del Estado de Durango, Av. Universidad y Fanny Anitúa S/N, Durango, Durango, C.P. 34000, Mexico. atellez@ujed.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus auerus (MRSA) strains are having a major impact worldwide, and due to their resistance to all β-lactams, an urgent need for new drugs is emerging. In this regard, the shikimate pathway is considered to be one of the metabolic features of bacteria and is absent in humans. Therefore enzymes involved in this route, such as shikimate dehydrogenase (SDH), are considered excellent targets for discovery of novel antibacterial drugs. In this study, the SDH from MRSA (SaSDH) was characterized. The results showed that the enzyme is a monomer with a molecular weight of 29 kDa, an optimum temperature of 65 °C, and a maximal pH range of 9-11 for its activity. Kinetic studies revealed that SDH showed Michaelis-Menten kinetics toward both substrates (shikimate and NADP+). Initial velocity analysis suggested that SaSDH catalysis followed a sequential random mechanism. Additionally, a tridimensional model of SaSDH was obtained by homology modeling and validated. Through virtual screening three inhibitors of SaSDH were found (compounds 238, 766 and 894) and their inhibition constants and mechanism were obtained. Flexible docking studies revealed that these molecules make interactions with catalytic residues. The data of this study could serve as starting point in the search of new chemotherapeutic agents against MRSA.

Indexed as

Alcohol OxidoreductasesAnti-Bacterial Agentsbeta-Lactam Resistancebeta-LactamsDrug DiscoveryEnzyme InhibitorsEscherichia coliGene ExpressionHigh-Throughput Screening AssaysKineticsMethicillin-Resistant Staphylococcus aureusMolecular Docking SimulationMolecular Dynamics SimulationMolecular WeightNADPRecombinant ProteinsAlcohol OxidoreductasesAnti-Bacterial Agentsbeta-LactamsEnzyme InhibitorsNADPRecombinant ProteinsShikimate dehydrogenaseShikimic Acid

Identifiers

PMID24727420
PMCPMC6270726

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.