Evidence map›Paper›PMID 24727272›Full record

ArticleApplied and environmental microbiology2014

Development and evaluation of a novel multicopy-element-targeting triplex PCR for detection of Mycobacterium avium subsp. paratuberculosis in feces.

Iker A Sevilla, Joseba M Garrido, Elena Molina, María V Geijo, Natalia Elguezabal, Patricia Vázquez, Ramón A Juste

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  6. Probiotic bacteria can modulate immune responses to paratuberculosis vaccination.Frontiers in cellular and infection microbiology · 2024
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  8. Improved DNA Amplification of the Hallmark ISApplied and environmental microbiology · 2023
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  15. Review
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  17. Detection of Wood Mice (Microorganisms · 2020
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Iker A SevillaDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain isevilla@neiker.net.ORCID http://orcid.org/0000-0003-3968-3390
Joseba M GarridoDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Elena MolinaDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
María V GeijoDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Natalia ElguezabalDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Patricia VázquezDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Ramón A JusteDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Tecnalia · ESNEIKER, the Basque Institute for Agricultural Research and Development · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enteropathy called paratuberculosis (PTB), which mainly affects ruminants and has a worldwide distribution, is caused by Mycobacterium avium subsp. paratuberculosis. This disease significantly reduces the cost-effectiveness of ruminant farms, and therefore, reliable and rapid detection methods are needed to control the spread of the bacterium in livestock and in the environment. The aim of this study was to identify a specific and sensitive combination of DNA extraction and amplification to detect M. avium subsp. paratuberculosis in feces. Negative bovine fecal samples were inoculated with increasing concentrations of two different bacterial strains (field and reference) to compare the performance of four extraction and five amplification protocols. The best results were obtained using the JohnePrep and MagMax extraction kits combined with an in-house triplex real-time PCR designed to detect IS900, ISMap02 (an insertion sequence of M. avium subsp. paratuberculosis present in 6 copies per genome), and an internal amplification control DNA simultaneously. These combinations detected 10 M. avium subsp. paratuberculosis cells/g of spiked feces. The triplex PCR detected 1 fg of genomic DNA extracted from the reference strain K10. The performance of the robotized version of the MagMax extraction kit combined with the IS900 and ISMap02 PCR was further evaluated using 615 archival fecal samples from the first sampling of nine Friesian cattle herds included in a PTB control program and followed up for at least 4 years. The analysis of the results obtained in this survey demonstrated that the diagnostic method was highly specific and sensitive for the detection of M. avium subsp. paratuberculosis in fecal samples from cattle and a very valuable tool to be used in PTB control programs.

Indexed as

DNA Transposable ElementsAnimalsCattleCattle DiseasesFecesGene DosageMultiplex Polymerase Chain ReactionMycobacterium avium subsp. paratuberculosisParatuberculosisDNA Transposable Elements

Identifiers

PMID24727272
PMCPMC4054133
OpenAlexW2142821447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.