Evidence map›Paper›PMID 24727133›Full record

ArticleJournal of structural biology2014

A method for 3D-reconstruction of a muscle thick filament using the tilt series images of a single filament electron tomogram.

G Márquez, A Pinto, L Alamo, B Baumann, F Ye, H Winkler, K Taylor, R Padrón

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

G MárquezCentro de Biología Estructural, Instituto Venezolano de Investigaciones Científicas (IVIC), Apdo. 20632, Caracas 1020A, Venezuela. Electronic address: eltavogus@gmail.com.
A PintoCentro de Biología Estructural, Instituto Venezolano de Investigaciones Científicas (IVIC), Apdo. 20632, Caracas 1020A, Venezuela. Electronic address: pinto.misle@gmail.com.
L AlamoCentro de Biología Estructural, Instituto Venezolano de Investigaciones Científicas (IVIC), Apdo. 20632, Caracas 1020A, Venezuela. Electronic address: alamo@ivic.gob.ve.
B BaumannInstitute of Molecular Biophysics, Florida State University, 91 Chieftan way, Tallahassee, FL 32306-4380, USA. Electronic address: baumann@sb.fsu.edu.
F YeInstitute of Molecular Biophysics, Florida State University, 91 Chieftan way, Tallahassee, FL 32306-4380, USA. Electronic address: feye@ucsd.edu.
H WinklerInstitute of Molecular Biophysics, Florida State University, 91 Chieftan way, Tallahassee, FL 32306-4380, USA. Electronic address: winkler@sb.fsu.edu.
K TaylorInstitute of Molecular Biophysics, Florida State University, 91 Chieftan way, Tallahassee, FL 32306-4380, USA. Electronic address: taylor@bio.fsu.edu.
R PadrónCentro de Biología Estructural, Instituto Venezolano de Investigaciones Científicas (IVIC), Apdo. 20632, Caracas 1020A, Venezuela. Electronic address: raul.padron@gmail.com.
Florida State University · USInstituto Venezolano de Investigaciones Científicas · VE

Funding

STRUCTUREU54GM064346 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI IMPERIALI, BARBARA · 2001 to 2010
$74.9M
XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 1985 to 2011
$17.6M
EM Studies of Dimeric Molecular MotorsR01AR047421 · NIAMS · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2001 to 2011
$2.6M
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR001081NCRR NIH HHS P41 RR-01081NIAMS NIH HHS R01 AR047421NIAMS NIH HHS R01 AR47421NIGMS NIH HHS U54 GM064346NIGMS NIH HHS U54 GM64346
6 · The paper itself

Abstract

Myosin interacting-heads (MIH) motifs are visualized in 3D-reconstructions of thick filaments from striated muscle. These reconstructions are calculated by averaging methods using images from electron micrographs of grids prepared using numerous filament preparations. Here we propose an alternative method to calculate the 3D-reconstruction of a single thick filament using only a tilt series images recorded by electron tomography. Relaxed thick filaments, prepared from tarantula leg muscle homogenates, were negatively stained. Single-axis tilt series of single isolated thick filaments were obtained with the electron microscope at a low electron dose, and recorded on a CCD camera by electron tomography. An IHRSR 3D-recontruction was calculated from the tilt series images of a single thick filament. The reconstruction was enhanced by including in the search stage dual tilt image segments while only single tilt along the filament axis is usually used, as well as applying a band pass filter just before the back projection. The reconstruction from a single filament has a 40 Å resolution and clearly shows the presence of MIH motifs. In contrast, the electron tomogram 3D-reconstruction of the same thick filament - calculated without any image averaging and/or imposition of helical symmetry - only reveals MIH motifs infrequently. This is - to our knowledge - the first application of the IHRSR method to calculate a 3D reconstruction from tilt series images. This single filament IHRSR reconstruction method (SF-IHRSR) should provide a new tool to assess structural differences between well-ordered thick (or thin) filaments in a grid by recording separately their electron tomograms.

Indexed as

Models, MolecularAnimalsElectron Microscope TomographyExtremitiesImaging, Three-DimensionalMicroscopy, ElectronMuscle, StriatedMyosinsSpidersMyosins3D-reconstructionElectron microscopyElectron tomographyMuscle thick filamentMyosin interacting-heads (MIH) motifNegative staining

Identifiers

PMID24727133
PMCPMC4102135
OpenAlexW2055356219

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.