Evidence map›Paper›PMID 24725993›Full record

ArticleBMC medical genetics2014

A novel mutation in DDR2 causing spondylo-meta-epiphyseal dysplasia with short limbs and abnormal calcifications (SMED-SL) results in defective intra-cellular trafficking.

Adila Al-Kindi, Praseetha Kizhakkedath, Huifang Xu, Anne John, Abeer Al Sayegh, Anuradha Ganesh, Maha Al-Awadi, Lamya Al-Anbouri, Lihadh Al-Gazali, Birgit Leitinger and 1 more

Abstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. A novel mutation inJCEM case reports · 2026
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  3. Osteonectin bidirectionally regulates osteoblast mineralization.Journal of orthopaedic surgery and research · 2023
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  6. Cranial Base Synchondrosis: Chondrocytes at the Hub.International journal of molecular sciences · 2022
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  11. Review
  12. Identification of a novel homozygous mutation in theIranian journal of basic medical sciences · 2021
    Article
  13. Review
  14. Modulation of biomimetic mineralization of collagen by soluble ectodomain of discoidin domain receptor 2.Materials science & engineering. C, Materials for biological applications · 2019
    Article
  15. Report of a Novel Homozygous NonsenseJournal of pediatric genetics · 2019
    Article
  16. Article
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  19. Skeletal Stem Cells: Origins, Functions and Uncertainties.Current molecular biology reports · 2017
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  20. Discoidin Receptor 2 Controls Bone Formation and Marrow Adipogenesis.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Adila Al-Kindi
Praseetha Kizhakkedath
Huifang Xu
Anne John
Abeer Al Sayegh
Anuradha Ganesh
Maha Al-Awadi
Lamya Al-Anbouri
Lihadh Al-Gazali
Birgit Leitinger
Bassam R AliDepartment of Pathology, College of Medicine and Heath Sciences, United Arab Emirates University, P,O, Box 17666 Al Ain, United Arab Emirates. bassam.ali@uaeu.ac.ae.

Funding

Biotechnology and Biological Sciences Research Council BB/I011226/1
6 · The paper itself

Abstract

backgroundThe rare autosomal genetic disorder, Spondylo-meta-epiphyseal dysplasia with short limbs and abnormal calcifications (SMED-SL), is reported to be caused by missense or splice site mutations in the human discoidin domain receptor 2 (DDR2) gene. Previously our group has established that trafficking defects and loss of ligand binding are the underlying cellular mechanisms of several SMED-SL causing mutations. Here we report the clinical characteristics of two siblings of consanguineous marriage with suspected SMED-SL and identification of a novel disease-causing mutation in the DDR2 gene.

methodsClinical evaluation and radiography were performed to evaluate the patients. All the coding exons and splice sites of the DDR2 gene were sequenced by Sanger sequencing. Subcellular localization of the mutated DDR2 protein was determined by confocal microscopy, deglycosylation assay and Western blotting. DDR2 activity was measured by collagen activation and Western analysis.

resultsIn addition to the typical features of SMED-SL, one of the patients has an eye phenotype including visual impairment due to optic atrophy. DNA sequencing revealed a novel homozygous dinucleotide deletion mutation (c.2468_2469delCT) on exon 18 of the DDR2 gene in both patients. The mutation resulted in a frameshift leading to an amino acid change at position S823 and a predicted premature termination of translation (p.S823Cfs*2). Subcellular localization of the mutant protein was analyzed in mammalian cell lines, and it was found to be largely retained in the endoplasmic reticulum (ER), which was further supported by its N-glycosylation profile. In keeping with its cellular mis-localization, the mutant protein was found to be deficient in collagen-induced receptor activation, suggesting protein trafficking defects as the major cellular mechanism underlying the loss of DDR2 function in our patients.

conclusionsOur results indicate that the novel mutation results in defective trafficking of the DDR2 protein leading to loss of function and disease. This confirms our previous findings that DDR2 missense mutations occurring at the kinase domain result in retention of the mutant protein in the ER.

Indexed as

Base SequenceBlotting, WesternDiscoidin Domain ReceptorsDNA PrimersDwarfismHumansImmunohistochemistryMicroscopy, ConfocalMolecular Sequence DataMutation, MissenseOptic AtrophyOsteochondrodysplasiasPedigreePhosphorylationProtein TransportRadiographyDiscoidin Domain ReceptorsDNA PrimersReceptor Protein-Tyrosine KinasesReceptors, Mitogen

Identifiers

PMID24725993
PMCPMC4001364

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.