Evidence map›Paper›PMID 24725348›Full record

ArticleBMC genomics2014

Proteomic comparison of Ralstonia solanacearum strains reveals temperature dependent virulence factors.

Ana M Bocsanczy, Ute C M Achenbach, Arianna Mangravita-Novo, Marjorie Chow, David J Norman

Abstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
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  3. Melanin Induction Restores the Pathogenicity ofJournal of fungi (Basel, Switzerland) · 2023
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  9. Comparative Proteomic Analysis of TwoInternational journal of molecular sciences · 2018
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  13. Article
  14. Comparative Genomics ofFrontiers in plant science · 2017
    Article
  15. Transcriptomes ofFrontiers in plant science · 2017
    Article
  16. Article
  17. Assessing the Pathogenic Ability ofFrontiers in plant science · 2017
    Article
  18. PeerJ · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ana M Bocsanczy
Ute C M Achenbach
Arianna Mangravita-Novo
Marjorie Chow
David J NormanDepartment of Plant Pathology, University of Florida, IFAS, Mid-Florida Research and Education Center, 2725 Binion Rd,, Apopka, FL 32703, USA. djn@ufl.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRalstonia solanacearum, the causal agent of bacterial wilt, is a genetically diverse bacterial plant pathogen present in tropical and subtropical regions of the world that infects more than 200 plant species, including economically important solanaceous crops. Most strains of R. solanacearum are only pathogenic at temperatures between 25 to 30°C with strains that can cause disease below 20°C considered a threat to agriculture in temperate areas. Identifying key molecular factors that distinguish strains virulent at cold temperatures from ones that are not is needed to develop effective management tools for this pathogen. We compared protein profiles of two strains virulent at low temperature and two strains not virulent at low temperature when incubated in the rhizosphere of tomato seedlings at 30 and 18°C using quantitative 2D DIGE gel methods. Spot intensities were quantified and compared, and differentially expressed proteins were sequenced and identified by mass spectrometry (MS/MS).

resultsFour hundred and eighteen (418) differentially expressed protein spots sequenced produced 101 unique proteins. The identified proteins were classified in the Gene Ontology biological processes categories of metabolism, cell processes, stress response, transport, secretion, motility, and virulence. Identified virulence factors included catalase (KatE), exoglucanase A (ChbA), drug efflux pump, and twitching motility porin (PilQ). Other proteins identified included two components of a putative type VI secretion system. We confirmed differential expression of 13 candidate genes using real time PCR techniques. Global regulators HrpB and HrpG also had temperature dependent expression when quantified by real time PCR.

conclusionsThe putative involvement of the identified proteins in virulence at low temperature is discussed. The discovery of a functional type VI secretion system provides a new potential virulence mechanism to explore. The global regulators HrpG and HrpB, and the protein expression profiles identified suggest that virulence at low temperatures can be partially explained by differences in regulation of virulence factors present in all the strains.

Indexed as

ProteomeProteomicsTemperatureVirulence FactorsBiological TransportComputational BiologyGene Expression ProfilingGene Expression Regulation, BacterialRalstonia solanacearumRNA, MessengerStress, PhysiologicalVirulenceProteomeRNA, MessengerVirulence Factors

Identifiers

PMID24725348
PMCPMC4023598

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.