Evidence map›Paper›PMID 24725301›Full record

ArticleBMC genomics2014

Knockout of an outer membrane protein operon of Anaplasma marginale by transposon mutagenesis.

Francy L Crosby, Heather L Wamsley, Melanie G Pate, Anna M Lundgren, Susan M Noh, Ulrike G Munderloh, Anthony F Barbet

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. MultipleFrontiers in cellular and infection microbiology · 2023
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  6. Article
  7. Review
  8. Frontiers in cellular and infection microbiology · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Peptide Nucleic Acid Knockdown and Intra-host Cell Complementation ofFrontiers in cellular and infection microbiology · 2017
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Francy L CrosbyCollege of Veterinary Medicine, University of Florida, Department of Infectious Diseases and Pathology, 2015 SW 16th avenue, Gainesville, FL 32610, USA. crosbyl@ufl.edu.
Heather L Wamsley
Melanie G Pate
Anna M Lundgren
Susan M Noh
Ulrike G Munderloh
Anthony F Barbet
University of Florida · USUniversity of Minnesota · US

Funding

Tick-Mammal Interface of Human Granulocytic AnaplasmosisR01AI042792 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUNDERLOH, ULRIKE GERTRUD · 2005 to 2020
$8.7M
NIAID NIH HHS R01 AI042792Wellcome Trust GR075800M
6 · The paper itself

Abstract

backgroundThe large amounts of data generated by genomics, transcriptomics and proteomics have increased our understanding of the biology of Anaplasma marginale. However, these data have also led to new assumptions that require testing, ideally through classical genetic mutation. One example is the definition of genes associated with virulence. Here we describe the molecular characterization of a red fluorescent and spectinomycin and streptomycin resistant A. marginale mutant generated by Himar1 transposon mutagenesis.

resultsHigh throughput genome sequencing to determine the Himar1-A. marginale genome junctions established that the transposon sequences were integrated within the coding region of the omp10 gene. This gene is arranged within an operon with AM1225 at the 5' end and with omp9, omp8, omp7 and omp6 arranged in tandem at the 3' end. RNA analysis to determine the effects of the transposon insertion on the expression of omp10 and downstream genes revealed that the Himar1 insertion not only reduced the expression of omp10 but also that of downstream genes. Transcript expression from omp9, and omp8 dropped by more than 90% in comparison with their counterparts in wild-type A. marginale. Immunoblot analysis showed a reduction in the production of Omp9 protein in these mutants compared to wild-type A. marginale.

conclusionsThese results demonstrate that transposon mutagenesis in A. marginale is possible and that this technology can be used for the creation of insertional gene knockouts that can be evaluated in natural host-vector systems.

Indexed as

DNA Transposable ElementsOperonAnaplasma marginaleBacterial Outer Membrane ProteinsBase SequenceBlotting, WesternChromosomes, BacterialDNA, BacterialGene Knockdown TechniquesGenes, BacterialMolecular Sequence DataMutagenesisBacterial Outer Membrane ProteinsDNA, BacterialDNA Transposable Elements

Identifiers

PMID24725301
PMCPMC4198910
OpenAlexW2160098512

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.