Evidence map›Paper›PMID 24723913›Full record

ArticleFrontiers in microbiology2014

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments.

Nicole M Scott, Matthias Hess, Nick J Bouskill, Olivia U Mason, Janet K Jansson, Jack A Gilbert

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 76 citations in OpenAlex.

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  15. Nitrogen Metabolism Genes from Temperate Marine Sediments.Marine biotechnology (New York, N.Y.) · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Nicole M ScottInstitute of Genomic and Systems Biology, Argonne National Laboratory Lemont, IL, USA ; Department of Ecology and Evolutionary Biology, University of Chicago Chicago, IL, USA.
Matthias HessEnergy and Efficiency Division, Chemical and Biological Process Development Group, Pacific Northwest National Laboratory Richland, WA, USA ; Systems Microbiology and Biotechnology Group, Washington State University Richland, WA, USA.
Nick J BouskillEcology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory Berkeley, CA, USA.
Olivia U MasonEarth, Ocean and Atmospheric Science, Florida State University Tallahassee, FL, USA.
Janet K JanssonEcology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory Berkeley, CA, USA.
Jack A GilbertInstitute of Genomic and Systems Biology, Argonne National Laboratory Lemont, IL, USA ; Department of Ecology and Evolutionary Biology, University of Chicago Chicago, IL, USA.
NASA Earth ScienceArgonne National Laboratory · USFlorida State University · USUniversity of Chicago · USWashington State University Tri-Cities · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance of genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. These data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems.

Indexed as

deepwater horizon oil spilldenitrificationmarine sedimentsmetagenomicsmicrobial ecologynitrogen cyclingoil contaminationoil seeps

Identifiers

PMID24723913
PMCPMC3971162
OpenAlexW2028344716

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.