Evidence map›Paper›PMID 24723816›Full record

ArticleTheScientificWorldJournal2014

Characterization of developmental- and stress-mediated expression of cinnamoyl-CoA reductase in kenaf (Hibiscus cannabinus L.).

Ritesh Ghosh, Bosung Choi, Byoung-Kwan Cho, Hyoun-Sub Lim, Sang-Un Park, Hyeun-Jong Bae, Savithiry Natarajan, Hanhong Bae

Open access · goldAbstract read
In one paragraph

Article in TheScientificWorldJournal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ritesh GhoshSchool of Biotechnology, Yeungnam University, Gyeongsan 712-749, Republic of Korea.ORCID 0000-0002-2528-7277
Bosung ChoiSchool of Biotechnology, Yeungnam University, Gyeongsan 712-749, Republic of Korea.ORCID 0000-0003-0577-063X
Byoung-Kwan ChoDepartment of Biosystems Machinery Engineering, Chungnam National University, Daejeon 305-764, Republic of Korea.ORCID 0000-0002-8397-9853
Hyoun-Sub LimDepartment of Applied Biology, Chungnam National University, Daejeon 305-764, Republic of Korea.
Sang-Un ParkDepartment of Crop Science, Chungnam National University, Daejeon 305-754, Republic of Korea.
Hyeun-Jong BaeDepartment of Bioenergy Science & Technology, Chonnam National University, Gwangju 500-757, Republic of Korea.
Savithiry NatarajanUS Department of Agriculture, Agricultural Research Service, Invasive Insects Biocontrol & Behavior Laboratory, 10300 Baltimore Avenue, Beltsville, MD 20705, USA.
Hanhong BaeSchool of Biotechnology, Yeungnam University, Gyeongsan 712-749, Republic of Korea.ORCID 0000-0002-0428-5918
Chonnam National University · KRChungnam National University · KRYeungnam University · KRAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cinnamoyl-CoA reductase (CCR) is an important enzyme for lignin biosynthesis as it catalyzes the first specific committed step in monolignol biosynthesis. We have cloned a full length coding sequence of CCR from kenaf (Hibiscus cannabinus L.), which contains a 1,020-bp open reading frame (ORF), encoding 339 amino acids of 37.37 kDa, with an isoelectric point (pI) of 6.27 (JX524276, HcCCR2). BLAST result found that it has high homology with other plant CCR orthologs. Multiple alignment with other plant CCR sequences showed that it contains two highly conserved motifs: NAD(P) binding domain (VTGAGGFIASWMVKLLLEKGY) at N-terminal and probable catalytic domain (NWYCYGK). According to phylogenetic analysis, it was closely related to CCR sequences of Gossypium hirsutum (ACQ59094) and Populus trichocarpa (CAC07424). HcCCR2 showed ubiquitous expression in various kenaf tissues and the highest expression was detected in mature flower. HcCCR2 was expressed differentially in response to various stresses, and the highest expression was observed by drought and NaCl treatments.

Indexed as

Aldehyde OxidoreductasesAmino Acid SequenceGene Expression Regulation, PlantGossypiumHibiscusMolecular Sequence DataPhylogenyPopulusSequence Homology, Amino AcidAldehyde Oxidoreductasescinnamoyl CoA reductase

Identifiers

PMID24723816
PMCPMC3958759
OpenAlexW2086866062

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.