Evidence map›Paper›PMID 24722050›Full record

ArticlePloS one2014

Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice.

Partha Sen, Avinash V Dharmadhikari, Tadeusz Majewski, Mahmoud A Mohammad, Tanya V Kalin, Joanna Zabielska, Xiaomeng Ren, Molly Bray, Hannah M Brown, Stephen Welty and 8 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  8. Therapeutic Potential of Endothelial Progenitor Cells in Pulmonary Diseases.American journal of respiratory cell and molecular biology · 2021
    Review
  9. Article
  10. Article
  11. Genome Editing for Rare Diseases.Current stem cell reports · 2020
    Article
  12. Article
  13. Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KITAmerican journal of respiratory and critical care medicine · 2019
    Article
  14. The S52F FOXF1 Mutation Inhibits STAT3 Signaling and Causes Alveolar Capillary Dysplasia.American journal of respiratory and critical care medicine · 2019
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 3 countries.

Partha SenDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America.
Avinash V DharmadhikariDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America; Interdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, Texas, United States of America.
Tadeusz MajewskiDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Mahmoud A MohammadDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America.
Tanya V KalinDivision of Pulmonary Biology, Cincinnati Children's Hospital Research Foundation, Cincinnati, Ohio, United States of America.
Joanna ZabielskaInstitute of Informatics, University of Warsaw, Warsaw, Poland.
Xiaomeng RenDivision of Pulmonary Biology, Cincinnati Children's Hospital Research Foundation, Cincinnati, Ohio, United States of America.
Molly BrayDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Hannah M BrownDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America; Robinson Research Institute, School of Pediatrics and Reproductive Health, University of Adelaide, Adelaide, Australia.
Stephen WeltyDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America.
Sundararajah ThevanantherDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America; Interdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, Texas, United States of America.
Claire LangstonDepartment of Pathology, Baylor College of Medicine, Houston, Texas, United States of America.
Przemyslaw SzafranskiDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Monica J JusticeDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America; Interdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, Texas, United States of America.
Vladimir V KalinichenkoDivision of Pulmonary Biology, Cincinnati Children's Hospital Research Foundation, Cincinnati, Ohio, United States of America.
Anna GambinInstitute of Informatics, University of Warsaw, Warsaw, Poland; Mossakowski Medical Research Center, Polish Academy of Sciences, Warsaw, Poland.
John BelmontDepartment of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America; Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Pawel StankiewiczDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America; Interdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, Texas, United States of America.
Baylor College of Medicine · USCincinnati Children's Hospital Medical Center · USMossakowski Medical Research Institute, Polish Academy of Sciences · PLThe University of Texas MD Anderson Cancer Center · USUniversity of Adelaide · AUUniversity of Alabama at Birmingham · USUniversity of Warsaw · PL

Funding

Pathogenetics of the FOX transcription factor gene cluster on 16q24.1R01HL101975 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI STANKIEWICZ, PAWEL · 2010 to 2013
$1.8M
NHLBI NIH HHS 1R01HL101975-01NHLBI NIH HHS R01 HL101975
6 · The paper itself

Abstract

Alveolar Capillary Dysplasia with Misalignment of Pulmonary Veins (ACDMPV) is a developmental disorder of the lungs, primarily affecting their vasculature. FOXF1 haploinsufficiency due to heterozygous genomic deletions and point mutations have been reported in most patients with ACDMPV. The majority of mice with heterozygous loss-of-function of Foxf1 exhibit neonatal lethality with evidence of pulmonary hemorrhage in some of them. By comparing transcriptomes of human ACDMPV lungs with control lungs using expression arrays, we found that several genes and pathways involved in lung development, angiogenesis, and in pulmonary hypertension development, were deregulated. Similar transcriptional changes were found in lungs of the postnatal day 0.5 Foxf1+/- mice when compared to their wildtype littermate controls; 14 genes, COL15A1, COL18A1, COL6A2, ESM1, FSCN1, GRINA, IGFBP3, IL1B, MALL, NOS3, RASL11B, MATN2, PRKCDBP, and SIRPA, were found common to both ACDMPV and Foxf1 heterozygous lungs. Our results advance knowledge toward understanding of the molecular mechanism of ACDMPV, lung development, and its vasculature pathology. These data may also be useful for understanding etiologies of other lung disorders, e.g. pulmonary hypertension, bronchopulmonary dysplasia, or cancer.

Indexed as

Genes, LethalTranscriptomeAnimalsAnimals, NewbornFemaleForkhead Transcription FactorsGene Expression ProfilingGene Expression RegulationHeterozygoteHumansInfant, NewbornLungMaleMetabolic Networks and PathwaysMiceMice, KnockoutForkhead Transcription FactorsFOXF1 protein, humanFoxf1 protein, mouse

Identifiers

PMID24722050
PMCPMC3983164
OpenAlexW2073647497

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.