Evidence map›Paper›PMID 24721971›Full record

ArticlePloS one2014

Real time RT-PCR assays for detection and typing of African horse sickness virus.

Katarzyna Bachanek-Bankowska, Sushila Maan, Javier Castillo-Olivares, Nicola M Manning, Narender Singh Maan, Abraham C Potgieter, Antonello Di Nardo, Geoff Sutton, Carrie Batten, Peter P C Mertens

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Article
  9. Quantitative RT-PCR assays for identification and typing of the Equine encephalosis virus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Katarzyna Bachanek-BankowskaVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Sushila MaanVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Javier Castillo-OlivaresVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Nicola M ManningVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Narender Singh MaanVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Abraham C PotgieterDeltamune (Pty) Ltd, Lyttelton, Centurion, South Africa; Department of Biochemistry, Centre for Human Metabonomics, North-West University, Private Bag X6001, Potchefstroom, South Africa.
Antonello Di NardoVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Geoff SuttonDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Carrie BattenVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
Peter P C MertensVector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Surrey, United Kingdom.
The Pirbright Institute · GBDeltamune (South Africa) · ZAUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H531478/1Biotechnology and Biological Sciences Research Council BBS/E/I/00001144Biotechnology and Biological Sciences Research Council BBS/E/I/00001446
6 · The paper itself

Abstract

Although African horse sickness (AHS) can cause up to 95% mortality in horses, naïve animals can be protected by vaccination against the homologous AHSV serotype. Genome segment 2 (Seg-2) encodes outer capsid protein VP2, the most variable of the AHSV proteins. VP2 is also a primary target for AHSV specific neutralising antibodies, and consequently determines the identity of the nine AHSV serotypes. In contrast VP1 (the viral polymerase) and VP3 (the sub-core shell protein), encoded by Seg-1 and Seg-3 respectively, are highly conserved, representing virus species/orbivirus-serogroup-specific antigens. We report development and evaluation of real-time RT-PCR assays targeting AHSV Seg-1 or Seg-3, that can detect any AHSV type (virus species/serogroup-specific assays), as well as type-specific assays targeting Seg-2 of the nine AHSV serotypes. These assays were evaluated using isolates of different AHSV serotypes and other closely related orbiviruses, from the 'Orbivirus Reference Collection' (ORC) at The Pirbright Institute. The assays were shown to be AHSV virus-species-specific, or type-specific (as designed) and can be used for rapid, sensitive and reliable detection and identification (typing) of AHSV RNA in infected blood, tissue samples, homogenised Culicoides, or tissue culture supernatant. None of the assays amplified cDNAs from closely related heterologous orbiviruses, or from uninfected host animals or cell cultures.

Indexed as

African Horse SicknessAfrican Horse Sickness VirusAnimalsAntibodies, NeutralizingCell LineCeratopogonidaeChlorocebus aethiopsCricetinaeDNA, ComplementaryDNA PrimersOrbivirusReal-Time Polymerase Chain ReactionReproducibility of ResultsRNA, ViralSensitivity and SpecificitySequence Homology, Nucleic AcidAntibodies, NeutralizingDNA, ComplementaryDNA PrimersRNA, Viral

Identifiers

PMID24721971
PMCPMC3983086
OpenAlexW2065012020

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.