Evidence map›Paper›PMID 24718691›Full record

ArticlePloS one2014

Structural and biochemical analysis of a unique phosphatase from Bdellovibrio bacteriovorus reveals its structural and functional relationship with the protein tyrosine phosphatase class of phytase.

Robert J Gruninger, John Thibault, Michael J Capeness, Robert Till, Steven C Mosimann, R Elizabeth Sockett, Brent L Selinger, Andrew L Lovering

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Bacterial PhyA protein-tyrosine phosphatase-likeThe Journal of biological chemistry · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Robert J GruningerLethbridge Research Center, Agriculture & Agri-Foods Canada, Lethbridge, AB, Canada.
John ThibaultDepartment of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada.
Michael J CapenessCentre for Genetics and Genomics, School of Life Sciences, University of Nottingham, Medical School, QMC, Nottingham, United Kingdom.
Robert TillCentre for Genetics and Genomics, School of Life Sciences, University of Nottingham, Medical School, QMC, Nottingham, United Kingdom.
Steven C MosimannDepartment of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, AB, Canada.
R Elizabeth SockettCentre for Genetics and Genomics, School of Life Sciences, University of Nottingham, Medical School, QMC, Nottingham, United Kingdom.
Brent L SelingerDepartment of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada.
Andrew L LoveringInstitute of Microbiology and Infection & School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
University of Lethbridge · CAUniversity of Nottingham · GBAgriculture and Agri-Food Canada · CAUniversity of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G013632/1
6 · The paper itself

Abstract

Bdellovibrio bacteriovorus is an unusual δ-proteobacterium that invades and preys on other Gram-negative bacteria and is of potential interest as a whole cell therapeutic against pathogens of man, animals and crops. PTPs (protein tyrosine phosphatases) are an important class of enzyme involved in desphosphorylating a variety of substrates, often with implications in cell signaling. The B. bacteriovorus open reading frame Bd1204 is predicted to encode a PTP of unknown function. Bd1204 is both structurally and mechanistically related to the PTP-like phytase (PTPLP) class of enzymes and possesses a number of unique properties not observed in any other PTPLPs characterized to date. Bd1204 does not display catalytic activity against some common protein tyrosine phosphatase substrates but is highly specific for hydrolysis of phosphomonoester bonds of inositol hexakisphosphate. The structure reveals that Bd1204 has the smallest and least electropositive active site of all characterized PTPLPs to date yet possesses a unique substrate specificity characterized by a strict preference for inositol hexakisphosphate. These two active site features are believed to be the most significant contributors to the specificity of phytate degrading enzymes. We speculate that Bd1204 may be involved in phosphate acquisition outside of prey.

Indexed as

6-PhytaseAmino Acid SequenceBdellovibrioBiocatalysisCatalytic DomainConserved SequenceCrystallography, X-RayGene Expression ProfilingModels, MolecularProtein Tyrosine PhosphatasesStatic ElectricityStructural Homology, ProteinStructure-Activity RelationshipSubstrate SpecificityTranscription, Genetic6-PhytaseProtein Tyrosine Phosphatases

Identifiers

PMID24718691
PMCPMC3981807
OpenAlexW2167369090

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.