Evidence map›Paper›PMID 24718603›Full record

ArticlePloS one2014

Molecular evolution of glycoside hydrolase genes in the Western corn rootworm (Diabrotica virgifera virgifera).

Seong-il Eyun, Haichuan Wang, Yannick Pauchet, Richard H Ffrench-Constant, Andrew K Benson, Arnubio Valencia-Jiménez, Etsuko N Moriyama, Blair D Siegfried

Erratum issuedOpen access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 3 institutions in 4 countries.

Seong-il EyunSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Haichuan WangDepartment of Entomology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Yannick PauchetDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany.
Richard H Ffrench-ConstantDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany.
Andrew K BensonFood Science and Technology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Arnubio Valencia-JiménezDepartment of Entomology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America; Biosciences, University of Exeter, Penryn, United Kingdom; Departamento de Producción Agropecuaria, Facultad de Ciencias Agropecuarias, Universidad de Caldas, Manizales, Colombia.
Etsuko N MoriyamaSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America; Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Blair D SiegfriedDepartment of Entomology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
University of Nebraska–Lincoln · USMax Planck Institute for Chemical Ecology · DEUniversity of Caldas · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellulose is an important nutritional resource for a number of insect herbivores. Digestion of cellulose and other polysaccharides in plant-based diets requires several types of enzymes including a number of glycoside hydrolase (GH) families. In a previous study, we showed that a single GH45 gene is present in the midgut tissue of the western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae). However, the presence of multiple enzymes was also suggested by the lack of a significant biological response when the expression of the gene was silenced by RNA interference. In order to clarify the repertoire of cellulose-degrading enzymes and related GH family proteins in D. v. virgifera, we performed next-generation sequencing and assembled transcriptomes from the tissue of three different developmental stages (eggs, neonates, and third instar larvae). Results of this study revealed the presence of seventy-eight genes that potentially encode GH enzymes belonging to eight families (GH45, GH48, GH28, GH16, GH31, GH27, GH5, and GH1). The numbers of GH45 and GH28 genes identified in D. v. virgifera are among the largest in insects where these genes have been identified. Three GH family genes (GH45, GH48, and GH28) are found almost exclusively in two coleopteran superfamilies (Chrysomeloidea and Curculionoidea) among insects, indicating the possibility of their acquisitions by horizontal gene transfer rather than simple vertical transmission from ancestral lineages of insects. Acquisition of GH genes by horizontal gene transfers and subsequent lineage-specific GH gene expansion appear to have played important roles for phytophagous beetles in specializing on particular groups of host plants and in the case of D. v. virgifera, its close association with maize.

Indexed as

Genes, InsectAmino Acid SequenceAnimalsColeopteraEvolution, MolecularGene Expression Regulation, DevelopmentalGlycoside HydrolasesInsect ProteinsLarvaMolecular Sequence DataOvumPhylogenyRNA InterferenceSequence AlignmentSequence Analysis, RNASequence Homology, Amino AcidGlycoside HydrolasesInsect Proteins

Identifiers

PMID24718603
PMCPMC3981738
OpenAlexW2041691715

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.