Evidence map›Paper›PMID 24717814›Full record

ArticleScientific reports2014

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista.

Akinori Yabuki, Ryoma Kamikawa, Sohta A Ishikawa, Martin Kolisko, Eunsoo Kim, Akifumi S Tanabe, Keitaro Kume, Ken-ichiro Ishida, Yuji Inagki

Abstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Evolutionary trajectory for nuclear functions of ciliary transport complex proteins.Microbiology and molecular biology reviews : MMBR · 2024
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  7. Genomic Insights into Plastid Evolution.Genome biology and evolution · 2020
    Review
  8. Article
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  10. Article
  11. The Photosynthetic Adventure of Paulinella Spp.Results and problems in cell differentiation · 2020
    Article
  12. Article
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  15. Article
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  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Akinori Yabuki1] Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan [2].
Ryoma Kamikawa1] Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Kyoto, Japan [2] Graduate School of Global Environmental Studies, Kyoto University, Kyoto, Kyoto, Japan [3].
Sohta A Ishikawa1] Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan [2] Graduate School of Systems and Information Engineering, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Martin Kolisko1] Departments of Biology, Dalhousie University, Halifax, Nova Scotia, Canada [2].
Eunsoo KimSackler Institute for Comparative Genomics and Division of Invertebrate Zoology, American Museum of Natural History, New York, NY, USA.
Akifumi S Tanabe1] Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan [2].
Keitaro KumeGraduate School of Systems and Information Engineering, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Ken-ichiro IshidaGraduate School of Systems and Information Engineering, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Yuji Inagki1] Graduate School of Systems and Information Engineering, University of Tsukuba, Tsukuba, Ibaraki, Japan [2] Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phylogenetic position of the marine biflagellate Palpitomonas bilix is intriguing, since several ultrastructural characteristics implied its evolutionary connection to Archaeplastida or Hacrobia. The origin and early evolution of these two eukaryotic assemblages have yet to be fully elucidated, and P. bilix may be a key lineage in tracing those groups' early evolution. In the present study, we analyzed a 'phylogenomic' alignment of 157 genes to clarify the position of P. bilix in eukaryotic phylogeny. In the 157-gene phylogeny, P. bilix was found to be basal to a clade of cryptophytes, goniomonads and kathablepharids, collectively known as Cryptista, which is proposed to be a part of the larger taxonomic assemblage Hacrobia. We here discuss the taxonomic assignment of P. bilix, and character evolution in Cryptista.

Indexed as

Amino Acid SequenceBase SequenceBiodiversityBiological EvolutionCell LineageCryptophytaEvolution, MolecularGene Expression ProfilingMolecular Sequence DataPhylogenySequence AlignmentSequence Analysis, RNATranscriptome

Identifiers

PMID24717814
PMCPMC3982174

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.