Evidence map›Paper›PMID 24714694›Full record

ArticleJournal of medical genetics2014

Comprehensive genotyping and clinical characterisation reveal 27 novel NKX2-1 mutations and expand the phenotypic spectrum.

Anne Thorwarth, Sarah Schnittert-Hübener, Pamela Schrumpf, Ines Müller, Sabine Jyrch, Christof Dame, Heike Biebermann, Gunnar Kleinau, Juri Katchanov, Markus Schuelke and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 4 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 4 syntheses or guidelines pooled it, 113 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Guideline
  5. Crystal structure of the NKX2-1 homeodomain bound to a palindromic DNA recognition sequence.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  6. Approach to the patient: genetics and management of congenital hypothyroidism.The Journal of clinical endocrinology and metabolism · 2026
    Article
  7. International Registry of NKX2-1-Related Disorders: Clinical, Genetic, and Imaging Perspectives.Movement disorders : official journal of the Movement Disorder Society · 2026
    Observational
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Biomedicines · 2024
    Review
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  16. Article
  17. Haploinsufficiency ofIntractable & rare diseases research · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 14 institutions in 8 countries.

Anne ThorwarthInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany Max Planck Institute for Molecular Genetics, Berlin, Germany.
Sarah Schnittert-HübenerInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Pamela SchrumpfInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Ines MüllerMax Planck Institute for Molecular Genetics, Berlin, Germany.
Sabine JyrchInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Christof DameDepartment of Neonatology, Charité University Medicine, Berlin, Germany.
Heike BiebermannInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Gunnar KleinauInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Juri KatchanovDepartment of Neurology, Charité University Medicine, Berlin, Germany.
Markus SchuelkeDepartment of Neuropediatrics, Charité University Medicine, Berlin, Germany.
Grit EbertMax Planck Institute for Molecular Genetics, Berlin, Germany.
Anne SteiningerMax Planck Institute for Molecular Genetics, Berlin, Germany.
Carsten BönnemannNeuromuscular and Neurogenetic Disorders of Childhood Section, National Institute of Neurological Disorders and Stroke, NIH, Bethesda, Maryland, USA.
Knut BrockmannInterdisciplinary Pediatric Center for Children with Developmental Disabilities and Severe Chronic Disorders, University Medical Center, Georg August University, Göttingen, Germany.
Hans-Jürgen ChristenDepartment for Neuropediatrics, Children's and Youth Hospital "Auf der Bult", Hannover, Germany.
Patricia CrockDivision of Pediatric Endocrinology & Diabetes, John Hunter Children's Hospital, Newcastle, Australia.
Francis deZegherDepartment of Woman and Child, University of Leuven, Leuven, Belgium.
Matthias GrieseDr. von Haunersches Kinderspital, Member of the German Center for Lung Research, University of Munich, Munich, Germany.
Jacqueline HewittDivision of Endocrinology & Diabetes, Royal Children's Hospital Melbourne, Melbourne, Australia.
Sten IvarssonDepartment of Clinical Sciences- Pediatric Endocrinology, University Hospital MAS, Malmö, Sweden.
Christoph HübnerDepartment of Neuropediatrics, Charité University Medicine, Berlin, Germany.
Klaus KapelariDepartment of Pediatric and Adolescent Medicine, Medical University of Innsbruck, Innsbruck, Austria.
Barbara PleckoDivision of Child Neurology, University Childrens Hospital Zurich, Zurich, Switzerland.
Dietz RatingDepartment for Neuropediatrics, Heidelberg University Hospital, Heidelberg, Germany.
Iva StoevaDepartment of Paediatric Endocrinology Screening and Functional Endocrine Diagnostics, University Paediatric Hospital, Medical University Sofia, Sofia, Bulgaria.
Hans-Hilger RopersMax Planck Institute for Molecular Genetics, Berlin, Germany.
Annette GrütersInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Reinhard UllmannMax Planck Institute for Molecular Genetics, Berlin, Germany.
Heiko KrudeInstitute for Experimental Pediatric Endocrinology, Charité University Medicine, Berlin, Germany.
Charité - Universitätsmedizin Berlin · DEMax Planck Institute for Molecular Genetics · DEGerman Center for Lung Research · DEHeidelberg University · DEInnsbruck Medical University · ATJohn Hunter Children's Hospital · AUKinderkrankenhaus auf der Bult · DEKU Leuven · BELund University · SEMedical University of Sofia · BGNational Institute of Neurological Disorders and Stroke · USRoyal Children's Hospital · AUUniversity Children's Hospital Zurich · CHUniversity of Göttingen · DE

Funding

Molecular and Clinical Manifestations of Matrix and Aggregate MyopathiesZIANS003129 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI BÖNNEMANN, CARSTEN · 2011 to 2025
$52.8M
Intramural NIH HHS Z99 NS999999Intramural NIH HHS ZIA NS003129
6 · The paper itself

Abstract

backgroundNKX2-1 encodes a transcription factor with large impact on the development of brain, lung and thyroid. Germline mutations of NKX2-1 can lead to dysfunction and malformations of these organs. Starting from the largest coherent collection of patients with a suspected phenotype to date, we systematically evaluated frequency, quality and spectrum of phenotypic consequences of NKX2-1 mutations.

methodsAfter identifying mutations by Sanger sequencing and array CGH, we comprehensively reanalysed the phenotype of affected patients and their relatives. We employed electrophoretic mobility shift assay (EMSA) to detect alterations of NKX2-1 DNA binding. Gene expression was monitored by means of in situ hybridisation and compared with the expression level of MBIP, a candidate gene presumably involved in the disorders and closely located in close genomic proximity to NKX2-1.

resultsWithin 101 index patients, we detected 17 point mutations and 10 deletions. Neurological symptoms were the most consistent finding (100%), followed by lung affection (78%) and thyroidal dysfunction (75%). Novel symptoms associated with NKX2-1 mutations comprise abnormal height, bouts of fever and cardiac septum defects. In contrast to previous reports, our data suggest that missense mutations in the homeodomain of NKX2-1 not necessarily modify its DNA binding capacity and that this specific type of mutations may be associated with mild pulmonary phenotypes such as asthma. Two deletions did not include NKX2-1, but MBIP, whose expression spatially and temporarily coincides with NKX2-1 in early murine development.

conclusionsThe high incidence of NKX2-1 mutations strongly recommends the routine screen for mutations in patients with corresponding symptoms. However, this analysis should not be confined to the exonic sequence alone, but should take advantage of affordable NGS technology to expand the target to adjacent regulatory sequences and the NKX2-1 interactome in order to maximise the yield of this diagnostic effort.

Indexed as

Genetic Diseases, InbornAdolescentChildChild, PreschoolComparative Genomic HybridizationDNA Copy Number VariationsElectrophoretic Mobility Shift AssayFemaleGene DeletionHumansInfantInfant, NewbornMaleNuclear ProteinsPhenotypePoint MutationNuclear ProteinsThyroid Nuclear Factor 1Transcription Factorsarray CGHchoreoathetosisCNVhypothyroidismNKX2-1

Identifiers

PMID24714694
PMCPMC5240655
OpenAlexW2167862658

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.