Evidence map›Paper›PMID 24714598›Full record

ArticleEMBO reports2014

RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response.

Lynda M Groocock, Minghua Nie, John Prudden, Davide Moiani, Tao Wang, Anton Cheltsov, Robert P Rambo, Andrew S Arvai, Chiharu Hitomi, John A Tainer and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. The Intra- and Extra-Telomeric Role of TRF2 in the DNA Damage Response.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Reading chromatin signatures after DNA double-strand breaks.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  19. SUMO, a small, but powerful, regulator of double-strand break repair.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  20. And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Lynda M GroocockDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA.
Minghua Nie
John Prudden
Davide Moiani
Tao Wang
Anton Cheltsov
Robert P Rambo
Andrew S Arvai
Chiharu Hitomi
John A Tainer
Karolin Luger
J Jefferson P Perry
Eros Lazzerini-Denchi
Michael N Boddy
Scripps Research Institute · USHoward Hughes Medical Institute · USLawrence Berkeley National Laboratory · USIn-Q-Tel · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
project 3P01GM088409 · NIGMS · COLORADO STATE UNIVERSITY · PI NYBORG, JENNIFER K. · 2010 to 2014
$7.3M
Studies of the Rad60-Smc5-Smc6 DNA Repair ComplexR01GM068608 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BODDY, MICHAEL N · 2003 to 2020
$6.2M
SUMO-dependent Regulation of Ubiquitin Ligases in Genomic StabilityR01GM081840 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BODDY, MICHAEL N · 2009 to 2018
$3.0M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Mechanisms of cell fate determination and aging onset upon telomere dysfunctionR01AG038677 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI LAZZERINI DENCHI, EROS · 2011 to 2015
$1.9M
Structural biochemistry studies on MAP kinase allosteric binding sitesR03AR059968 · NIAMS · SCRIPPS RESEARCH INSTITUTE, THE · PI PERRY, JOHN JEFFERSON · 2011 to 2013
$280k
NCI NIH HHS CA092584NCI NIH HHS P01 CA092584NIAMS NIH HHS AR059968NIAMS NIH HHS R03 AR059968NIA NIH HHS AG038677NIA NIH HHS R01 AG038677NIGMS NIH HHS GM068608NIGMS NIH HHS GM088409NIGMS NIH HHS GM105404NIGMS NIH HHS GM81840NIGMS NIH HHS P01 GM088409NIGMS NIH HHS R01 GM068608NIGMS NIH HHS R01 GM081840NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

The post-translational modification of DNA repair and checkpoint proteins by ubiquitin and small ubiquitin-like modifier (SUMO) critically orchestrates the DNA damage response (DDR). The ubiquitin ligase RNF4 integrates signaling by SUMO and ubiquitin, through its selective recognition and ubiquitination of SUMO-modified proteins. Here, we define a key new determinant for target discrimination by RNF4, in addition to interaction with SUMO. We identify a nucleosome-targeting motif within the RNF4 RING domain that can bind DNA and thereby enables RNF4 to selectively ubiquitinate nucleosomal histones. Furthermore, RNF4 nucleosome-targeting is crucially required for the repair of TRF2-depleted dysfunctional telomeres by 53BP1-mediated non-homologous end joining.

Indexed as

DNA RepairAmino Acid MotifsAnimalsCell LineChromosomal Proteins, Non-HistoneCrystallography, X-RayDNA-Binding ProteinsDNA DamageGene Knockout TechniquesMiceNuclear ProteinsNucleosomesProtein Processing, Post-TranslationalProtein Structure, TertiarySmall Ubiquitin-Related Modifier ProteinsTamoxifenafimoxifeneChromosomal Proteins, Non-HistoneDNA-Binding ProteinsNuclear ProteinsNucleosomesRnf4 protein, mouseSmall Ubiquitin-Related Modifier ProteinsTamoxifenTelomeric Repeat Binding Protein 2Transcription FactorsTRF2 protein, mouseTrp53bp1 protein, mouseTumor Suppressor p53-Binding Protein 1UbiquitinUbiquitin-Protein Ligases

Identifiers

PMID24714598
PMCPMC4210088
OpenAlexW2119126606

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.