Evidence map›Paper›PMID 24714562›Full record

ArticleNature communications2014

Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides.

Diana Paola Granados, Dev Sriranganadane, Tariq Daouda, Antoine Zieger, Céline M Laumont, Olivier Caron-Lizotte, Geneviève Boucher, Marie-Pierre Hardy, Patrick Gendron, Caroline Côté and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 108 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Comparison of Shared Class I HLA-Bound Noncanonical Neoepitopes between Normal and Neoplastic Tissues of Pancreatic Adenocarcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  7. Article
  8. Article
  9. Iranian journal of biotechnology · 2024
    Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. COVID-19 Pandemic: Escape of Pathogenic Variants and MHC Evolution.International journal of molecular sciences · 2022
    Article
  17. Review
  18. Article
  19. Review
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Diana Paola Granados1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Medicine, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [3].
Dev Sriranganadane1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Chemistry, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [3].
Tariq Daouda1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Informatics and Operational Research, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [3].
Antoine Zieger1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Informatics and Operational Research, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Céline M Laumont1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Medicine, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Olivier Caron-LizotteInstitute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Geneviève BoucherInstitute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Marie-Pierre HardyInstitute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Patrick GendronInstitute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Caroline CôtéInstitute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Sébastien Lemieux1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Informatics and Operational Research, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Pierre Thibault1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Chemistry, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Claude Perreault1] Institute for Research in Immunology and Cancer, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7 [2] Department of Medicine, Université de Montréal, P.O. Box 6128, Downtown Station, Montreal, Quebec, Canada H3C 3J7.
Institute for Research in Immunology and Cancer · CAUniversité de Montréal · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

For decades, the global impact of genomic polymorphisms on the repertoire of peptides presented by major histocompatibility complex (MHC) has remained a matter of speculation. Here we present a novel approach that enables high-throughput discovery of polymorphic MHC class I-associated peptides (MIPs), which play a major role in allorecognition. On the basis of comprehensive analyses of the genomic landscape of MIPs eluted from B lymphoblasts of two MHC-identical siblings, we show that 0.5% of non-synonymous single nucleotide variations are represented in the MIP repertoire. The 34 polymorphic MIPs found in our subjects are encoded by bi-allelic loci with dominant and recessive alleles. Our analyses show that, at the population level, 12% of the MIP-coding exome is polymorphic. Our method provides fundamental insights into the relationship between the genomic self and the immune self and accelerates the discovery of polymorphic MIPs (also known as minor histocompatibility antigens).

Indexed as

AllelesHumansMajor Histocompatibility ComplexPeptidesPolymorphism, GeneticPeptides

Identifiers

PMID24714562
PMCPMC3996541
OpenAlexW2092737769

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.