Evidence map›Paper›PMID 24714200›Full record

ArticlePloS one2014

Tools for gene-regulatory analyses in the marine annelid Platynereis dumerilii.

Benjamin Backfisch, Vitaly V Kozin, Stephan Kirchmaier, Kristin Tessmar-Raible, Florian Raible

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A GBMC biology · 2018
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Benjamin BackfischMax Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria; Research Platform "Marine Rhythms of Life," University of Vienna, Vienna, Austria.
Vitaly V KozinMax Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria; Department of Embryology, St. Petersburg State University, St. Petersburg, Russia.
Stephan KirchmaierMax Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria.
Kristin Tessmar-RaibleMax Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria; Research Platform "Marine Rhythms of Life," University of Vienna, Vienna, Austria.
Florian RaibleMax Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria; Research Platform "Marine Rhythms of Life," University of Vienna, Vienna, Austria.
University of Vienna · ATMax Perutz Labs · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the field of evolution and development. Despite these advances, a critical bottleneck for the exploration of new model species remains the establishment of functional tools, such as the ability to experimentally express genes in specific cells of an organism. We recently established a first transgenic strain of the annelid Platynereis, using a Tc1/mariner-type Mos1 transposon vector. Here, we compare Mos1 with Tol2, a member of the hAT family of transposons. In Platynereis, Tol2-based constructs showed a higher frequency of nuclear genome insertion and sustained gene expression in the G0 generation. However, in contrast to Mos1-mediated transgenes, Tol2-mediated insertions failed to retain fluorescence in the G1 generation, suggesting a germ line-based silencing mechanism. Furthermore, we present three novel expression constructs that were generated by a simple fusion-PCR approach and allow either ubiquitous or cell-specific expression of a reporter gene. Our study indicates the versatility of Tol2 for transient transgenesis, and provides a template for transgenesis work in other emerging reference species.

Indexed as

DNA Transposable ElementsAnimalsAnimals, Genetically ModifiedAnnelidaBase SequenceDNA-Binding ProteinsGene Regulatory NetworksTransposasesDNA-Binding ProteinsDNA Transposable Elementsmariner transposasesTransposases

Identifiers

PMID24714200
PMCPMC3979674
OpenAlexW2091129492

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.