ArticleJournal of experimental botany2014
Large-scale screening of transcription factor-promoter interactions in spruce reveals a transcriptional network involved in vascular development.
Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
30 citing papers in PubMed, 50 citations in OpenAlex.
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- Temporal expression analysis of microRNAs and their target GRAS genes induced by osmotic stress in two contrasting wheat genotypes.Molecular biology reports · 2023Article
- Genome-Wide Prediction of Transcription Start Sites in Conifers.International journal of molecular sciences · 2022Article
- Overexpression ofInternational journal of molecular sciences · 2020Article
- Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce.Plant physiology · 2019Article
- Analysis of OrthologousInternational journal of molecular sciences · 2019Article
- Plant proteases during developmental programmed cell death.Journal of experimental botany · 2019Review
- Functional Analysis of theFrontiers in plant science · 2019Article
- PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.Plant biotechnology journal · 2018Article
- Ethylene-Related Gene Expression Networks in Wood Formation.Frontiers in plant science · 2018Article
- NorWood: a gene expression resource for evo-devo studies of conifer wood development.The New phytologist · 2017Article
- Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls.BMC genomics · 2017Article
- A Key Role for Apoplastic HPlant physiology · 2017Article
- Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.Plant molecular biology · 2017Article
- Overexpression of PaNAC03, a stress induced NAC gene family transcription factor in Norway spruce leads to reduced flavonol biosynthesis and aberrant embryo development.BMC plant biology · 2017Article
- Identification of Norway Spruce MYB-bHLH-WDR Transcription Factor Complex Members Linked to Regulation of the Flavonoid Pathway.Frontiers in plant science · 2017Article
- MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network.Frontiers in plant science · 2017Review
- Developmental Changes in Scots Pine Transcriptome during Heartwood Formation.Plant physiology · 2016Article
- Identification and characterization of a novel NAC-like gene in chrysanthemum (Dendranthema lavandulifolium).Plant cell reports · 2016Article
Corrections and comments
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Authors and funding
9 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This research aimed to investigate the role of diverse transcription factors (TFs) and to delineate gene regulatory networks directly in conifers at a relatively high-throughput level. The approach integrated sequence analyses, transcript profiling, and development of a conifer-specific activation assay. Transcript accumulation profiles of 102 TFs and potential target genes were clustered to identify groups of coordinately expressed genes. Several different patterns of transcript accumulation were observed by profiling in nine different organs and tissues: 27 genes were preferential to secondary xylem both in stems and roots, and other genes were preferential to phelloderm and periderm or were more ubiquitous. A robust system has been established as a screening approach to define which TFs have the ability to regulate a given promoter in planta. Trans-activation or repression effects were observed in 30% of TF-candidate gene promoter combinations. As a proof of concept, phylogenetic analysis and expression and trans-activation data were used to demonstrate that two spruce NAC-domain proteins most likely play key roles in secondary vascular growth as observed in other plant species. This study tested many TFs from diverse families in a conifer tree species, which broadens the knowledge of promoter-TF interactions in wood development and enables comparisons of gene regulatory networks found in angiosperms and gymnosperms.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.