Evidence map›Paper›PMID 24713846›Full record

ArticleScientific reports2014

A color-tunable molecular beacon to sense miRNA-9 expression during neurogenesis.

Hae Young Ko, Jonghwan Lee, Jin Young Joo, Yong Seung Lee, Hyejung Heo, Jung Jae Ko, Soonhag Kim

Abstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hae Young KoDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Jonghwan LeeDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Jin Young JooDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Yong Seung LeeDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Hyejung HeoDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Jung Jae KoDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.
Soonhag KimDepartment of Biomedical Science, College of Life Science, CHA University, 605-21 Yeoksam 1-dong, Gangnam-gu, Seoul 135-081, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A typical molecular beacon (MB) composing of a fluorophore and a quencher has been used to sense various intracellular biomolecules including microRNAs (miRNA, miR). However, the on/off-tunable miRNA MB is difficult to distinguish whether the observed low fluorescence brightness results from low miRNA expression or low transfection of the miRNA MB. We developed a color-tunable miRNA-9 MB (ColoR9 MB) to sense miR-9 expression-dependent color change. The ColoR9 MB was synthesized by a partially double-stranded DNA oligonucleotide containing a miR-9 binding site and a reporter probe with Cy3/black hole quencher 1 (BHQ1) at one end and a reference probe with Cy5.5 at the other end. The ColoR9 MB visualized CHO and P19 cells with red color in the absence of miR-9 and yellow color in the presence of miR-9. In vivo imaging demonstrated that the green fluorescence recovery of the reporter probe from the ColoR9 MB increased gradually during neuronal differentiation of P19 cells, whereas red fluorescence activity of the reference probe remained constant. These results showed the great specificity of sensing miR-9 expression- and neurogenesis-dependent color change.

Indexed as

AnimalsBinding SitesCell Line, TumorCHO CellsCricetulusDNAFluorescent DyesMiceMice, Inbred BALB CMice, NudeMicroRNAsNeurogenesisOligonucleotide ProbesOptical ImagingRE1-Silencing Transcription FactorRepressor ProteinsDNAFluorescent DyesMicroRNAsMIRN9 microRNA, mouseOligonucleotide ProbesRE1-Silencing Transcription FactorRepressor Proteins

Identifiers

PMID24713846
PMCPMC3980227

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.