Evidence map›Paper›PMID 24713404›Full record

ArticleMedical mycology2014

Role of autophagy genetic variants for the risk of Candida infections.

Diana C Rosentul, Theo S Plantinga, Marius Farcas, Marije Oosting, Omar J M Hamza, William K Scott, Barbara D Alexander, John C Yang, Gregory M Laird, Leo A B Joosten and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Medical mycology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Immunity-related GTPase IRGM at the intersection of autophagy, inflammation, and tumorigenesis.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Review
  4. Autophagy and Skin Diseases.Frontiers in pharmacology · 2022
    Review
  5. Review
  6. The Interplay of Host Autophagy and Eukaryotic Pathogens.Frontiers in cell and developmental biology · 2018
    Review
  7. Phagocytosis ofOxidative medicine and cellular longevity · 2018
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Frontiers in microbiology · 2016
    Article
  13. Review
  14. Immune defence against Candida fungal infections.Nature reviews. Immunology · 2015
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Diana C RosentulDepartment of Medicine, Radboud University Nijmegen Medical Center, Nijmegen, the Netherlands.
Theo S Plantinga
Marius Farcas
Marije Oosting
Omar J M Hamza
William K Scott
Barbara D Alexander
John C Yang
Gregory M Laird
Leo A B Joosten
Jos W M van der Meer
John R Perfect
Bart-Jan Kullberg
Andre J A M van der Ven
Melissa D Johnson
Mihai G Netea
Radboud University Nijmegen · NLDuke Medical Center · USCampbell University · USIuliu Hațieganu University of Medicine and Pharmacy · ROMuhimbili University of Health and Allied Sciences · TZUniversity of Colorado Denver · USUniversity of Miami · US

Funding

Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Host-Response Relationships in Patients with CandidemiaK23AI051537 · NIAID · DUKE UNIVERSITY · PI JOHNSON, MELISSA D · 2002 to 2006
$721k
NIAID NIH HHS AI-51537NIAID NIH HHS AI-73896NIAID NIH HHS K23 AI051537NIAID NIH HHS L30 AI057128NIAID NIH HHS R01 AI073896
6 · The paper itself

Abstract

Candida albicans can cause candidemia in neutropenic and critically ill patients and oropharyngeal candidiasis in human immunodeficiency virus (HIV)-positive patients with low CD4(+) counts. Because all patients at risk do not develop Candida infections, it is possible that a patient's genetic background might play a role in his or her susceptibility to infection. Autophagy mediates pathogen clearance and modulation of inflammation. Our aim was to assess the effect of genetic variations in the ATG16L1 and IRGM autophagy genes on the susceptibility of patients with candidemia and oropharyngeal candidiasis. We assessed genetic variations in the ATG16L1 and IRGM genes in a cohort of candidemia patients of both African and European origin. In addition, we evaluated the effect of these polymorphisms on the susceptibility to oropharyngeal candidiasis of an HIV-positive cohort from Tanzania. Functional studies have been performed to assess the effect of the ATG16L1 and IRGM genetic variants on both in vitro and in vivo cytokine production. The results indicate that ATG16L1 variants modulate production of tumor necrosis factor-alpha, but not other cytokines, while no effects were seen in the presence of IRGM polymorphisms. In addition, no significant associations between the single-nucleotide polymorphisms in the ATG16L1 and IRGM genetic variants and the incidence of candidemia or oropharyngeal candidiasis were identified. Despite moderate effects on the modulation of proinflammatory cytokine production, genetic variation in the autophagy genes ATG16L1 and IRGM has a minor impact on the susceptibility to both mucosal and systemic Candida infections.

Indexed as

AutophagyGenetic Predisposition to DiseaseAfricaAutophagy-Related ProteinsCandidiasisCarrier ProteinsCohort StudiesCytokinesEuropeGTP-Binding ProteinsHumansPolymorphism, Single NucleotideRisk AssessmentATG16L1 protein, humanAutophagy-Related ProteinsCarrier ProteinsCytokinesGTP-Binding ProteinsIRGM protein, humanautophagyCandida albicanscandidemiagenetic association studyHIVoropharyngeal candidiasis

Identifiers

PMID24713404
PMCPMC4687479
OpenAlexW2121594506

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.