Evidence map›Paper›PMID 24712693›Full record

ArticleJournal of proteome research2014

Blue light-induced proteomic changes in etiolated Arabidopsis seedlings.

Zhiping Deng, Juan A Oses-Prieto, Ulrich Kutschera, Tong-Seung Tseng, Lingzhao Hao, Alma L Burlingame, Zhi-Yong Wang, Winslow R Briggs

Abstract read
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Distinct Responses to Light in Plants.Plants (Basel, Switzerland) · 2020
    Review
  7. The continuing arc toward phototropic enlightenment.Journal of experimental botany · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. ThePlant physiology · 2018
    Article
  14. Article
  15. From Goethe's plant archetype via Haeckel's biogenetic law to plant evo-devo 2016.Theory in biosciences = Theorie in den Biowissenschaften · 2017
    Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhiping DengDepartment of Plant Biology, Carnegie Institution for Science , Stanford, California 94305, United States.
Juan A Oses-Prieto
Ulrich Kutschera
Tong-Seung Tseng
Lingzhao Hao
Alma L Burlingame
Zhi-Yong Wang
Winslow R Briggs

Funding

Genetic Biochemical Studies of Signaling in Growth and AcclimationR01GM066258 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI ZHIYONG WANG · 2002 to 2026
$10.5M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
PURCHASE OF LTQ FT-ICR HYBRID MASS SPECTROMETER: (HEI) PROTEOMICSS10RR019934 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BURLINGAME, ALMA L · 2004 to 2004
$1.0M
NCRR NIH HHS 1S10RR019934NIGMS NIH HHS 8P41GM103481NIGMS NIH HHS P41 GM103481NIGMS NIH HHS R01 GM066258NIGMS NIH HHS R01GM066258
6 · The paper itself

Abstract

Plants adapt to environmental light conditions by photoreceptor-mediated physiological responses, but the mechanism by which photoreceptors perceive and transduce the signals is still unresolved. Here, we used 2D difference gel electrophoresis (2D DIGE) and mass spectrometry to characterize early molecular events induced by short blue light exposures in etiolated Arabidopsis seedlings. We observed the phosphorylation of phototropin 1 (phot1) and accumulation of weak chloroplast movement under blue light 1 (WEB1) in the membrane fraction after blue light irradiation. Over 50 spots could be observed for the two rows of phot1 spots in the 2-DE gels, and eight novel phosphorylated Ser/Thr sites were identified in the N-terminus and Hinge 1 regions of phot1 in vivo. Blue light caused ubiquitination of phot1, and K526 of phot1 was identified as a putative ubiquitination site. Our study indicates that post-translational modification of phot1 is more complex than previously reported.

Indexed as

LightAmino Acid SequenceArabidopsisArabidopsis ProteinsBinding SitesBlotting, WesternCarrier ProteinsChromatography, LiquidElectrophoresis, Gel, Two-DimensionalEtiolationGreen Fluorescent ProteinsMass SpectrometryMolecular Sequence DataPhosphopeptidesPhosphoproteinsPhosphorylationArabidopsis ProteinsCarrier ProteinsGreen Fluorescent ProteinsNPH1 protein, ArabidopsisPhosphopeptidesPhosphoproteinsProtein Serine-Threonine KinasesProteomeSerineThreonineWeb1 protein, Arabidopsis

Identifiers

PMID24712693
PMCPMC4015686

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.