Evidence map›Paper›PMID 24711725›Full record

ArticleArchaea (Vancouver, B.C.)2014

Phylogenetic diversity of archaea and the archaeal ammonia monooxygenase gene in uranium mining-impacted locations in Bulgaria.

Galina Radeva, Anelia Kenarova, Velina Bachvarova, Katrin Flemming, Ivan Popov, Dimitar Vassilev, Sonja Selenska-Pobell

Open access · hybridAbstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Role of environmental factors in shaping the soil microbiome.Environmental science and pollution research international · 2020
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Galina RadevaHelmholtz-Centre Dresden-Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany ; Institute of Molecular Biology, Bulgarian Academy of Sciences, Academic G. Bonchev Street, Building 21, 1113 Sofia, Bulgaria.
Anelia KenarovaFaculty of Biology, Sofia University, 8 Dragan Tsankov Boulevard, 1164 Sofia, Bulgaria.
Velina BachvarovaInstitute of Molecular Biology, Bulgarian Academy of Sciences, Academic G. Bonchev Street, Building 21, 1113 Sofia, Bulgaria.
Katrin FlemmingHelmholtz-Centre Dresden-Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany.ORCID 0000-0002-3954-7682
Ivan PopovMolecular Medicine Centre, Medical University of Sofia, 1 Georgy Sofiiski Street, 1431 Sofia, Bulgaria.
Dimitar VassilevAgrobioinstitute, 8 Dragan Tsankov Boulevard, 1164 Sofia, Bulgaria.ORCID 0000-0002-2478-7528
Sonja Selenska-PobellHelmholtz-Centre Dresden-Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany.
Bulgarian Academy of Sciences · BGHelmholtz-Zentrum Dresden-Rossendorf · DEAgrobioinstitute · BGMedical University of Sofia · BGSofia University "St. Kliment Ohridski" · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uranium mining and milling activities adversely affect the microbial populations of impacted sites. The negative effects of uranium on soil bacteria and fungi are well studied, but little is known about the effects of radionuclides and heavy metals on archaea. The composition and diversity of archaeal communities inhabiting the waste pile of the Sliven uranium mine and the soil of the Buhovo uranium mine were investigated using 16S rRNA gene retrieval. A total of 355 archaeal clones were selected, and their 16S rDNA inserts were analysed by restriction fragment length polymorphism (RFLP) discriminating 14 different RFLP types. All evaluated archaeal 16S rRNA gene sequences belong to the 1.1b/Nitrososphaera cluster of Crenarchaeota. The composition of the archaeal community is distinct for each site of interest and dependent on environmental characteristics, including pollution levels. Since the members of 1.1b/Nitrososphaera cluster have been implicated in the nitrogen cycle, the archaeal communities from these sites were probed for the presence of the ammonia monooxygenase gene (amoA). Our data indicate that amoA gene sequences are distributed in a similar manner as in Crenarchaeota, suggesting that archaeal nitrification processes in uranium mining-impacted locations are under the control of the same key factors controlling archaeal diversity.

Indexed as

Genetic VariationPhylogenySoil MicrobiologyBulgariaCluster AnalysisCrenarchaeotaDNA, ArchaealDNA, RibosomalMolecular Sequence DataOxidoreductasesPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNAammonia monooxygenaseDNA, ArchaealDNA, RibosomalOxidoreductasesRNA, Ribosomal, 16S

Identifiers

PMID24711725
PMCPMC3966351
OpenAlexW2018370515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.