Evidence map›Paper›PMID 24711454›Full record

ArticleThe Journal of biological chemistry2014

Rad52/Rad59-dependent recombination as a means to rectify faulty Okazaki fragment processing.

Miju Lee, Chul-Hwan Lee, Annie Albert Demin, Palinda Ruvan Munashingha, Tamir Amangyeld, Buki Kwon, Tim Formosa, Yeon-Soo Seo

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Effects of PCNA Stability on the Formation of Mutations.International journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Recombineering and MAGE.Nature reviews. Methods primers · 2021
    Article
  8. FEN1 endonuclease as a therapeutic target for human cancers with defects in homologous recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Miju LeeFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Chul-Hwan LeeFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Annie Albert DeminFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Palinda Ruvan MunashinghaFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Tamir AmangyeldFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Buki KwonFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and.
Tim Formosathe Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112.
Yeon-Soo SeoFrom the Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea and yeonsooseo@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KRUniversity of Utah · US

Funding

Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
DNA POLYMERASE ACCESSORY PROTEINS FROM EUKARYOTIC CELLSR01GM043424 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 1995 to 1999
–
NIGMS NIH HHS R01 GM064649
6 · The paper itself

Abstract

The correct removal of 5'-flap structures by Rad27 and Dna2 during Okazaki fragment maturation is crucial for the stable maintenance of genetic materials and cell viability. In this study, we identified RAD52, a key recombination protein, as a multicopy suppressor of dna2-K1080E, a lethal helicase-negative mutant allele of DNA2 in yeasts. In contrast, the overexpression of Rad51, which works conjointly with Rad52 in canonical homologous recombination, failed to suppress the growth defect of the dna2-K1080E mutation, indicating that Rad52 plays a unique and distinct role in Okazaki fragment metabolism. We found that the recombination-defective Rad52-QDDD/AAAA mutant did not rescue dna2-K1080E, suggesting that Rad52-mediated recombination is important for suppression. The Rad52-mediated enzymatic stimulation of Dna2 or Rad27 is not a direct cause of suppression observed in vivo, as both Rad52 and Rad52-QDDD/AAAA proteins stimulated the endonuclease activities of both Dna2 and Rad27 to a similar extent. The recombination mediator activity of Rad52 was dispensable for the suppression, whereas both the DNA annealing activity and its ability to interact with Rad59 were essential. In addition, we found that several cohesion establishment factors, including Rsc2 and Elg1, were required for the Rad52-dependent suppression of dna2-K1080E. Our findings suggest a novel Rad52/Rad59-dependent, but Rad51-independent recombination pathway that could ultimately lead to the removal of faulty flaps in conjunction with cohesion establishment factors.

Indexed as

Homologous RecombinationDNADNA-Binding ProteinsDNA HelicasesDNA RepairDNA ReplicationImmunoblottingMutationRad52 DNA Repair and Recombination ProteinSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNADNA2 protein, S cerevisiaeDNA-Binding ProteinsDNA HelicasesOkazaki fragmentsRad52 DNA Repair and Recombination ProteinRAD52 protein, S cerevisiaeRAD59 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsDna2DNA HelicaseDNA RecombinationDNA RepairDNA ReplicationGenome IntegrityHomologous RecombinationLagging Strand SynthesisRad52Rad59

Identifiers

PMID24711454
PMCPMC4031557
OpenAlexW2043319673

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.