Evidence map›Paper›PMID 24711371›Full record

ArticleNucleic acids research2014

Solution structure of a 2:1 complex of anticancer drug XR5944 with TFF1 estrogen response element: insights into DNA recognition by a bis-intercalator.

Clement Lin, Raveendra I Mathad, Zhenjiang Zhang, Neil Sidell, Danzhou Yang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Selective antagonism of cJun for cancer therapy.Journal of experimental & clinical cancer research : CR · 2020
    Review
  6. Targeting Transcription Factors for Cancer Treatment.Molecules (Basel, Switzerland) · 2018
    Review
  7. Article
  8. Transition Metal Intercalators as Anticancer Agents-Recent Advances.International journal of molecular sciences · 2016
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Clement LinCollege of Pharmacy, University of Arizona, 1703 E. Mabel Street, Tucson, AZ 85721, USA.
Raveendra I MathadCollege of Pharmacy, University of Arizona, 1703 E. Mabel Street, Tucson, AZ 85721, USA.
Zhenjiang ZhangCollege of Pharmacy, University of Arizona, 1703 E. Mabel Street, Tucson, AZ 85721, USA.
Neil SidellDepartment of Gynecology and Obstetrics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Danzhou YangCollege of Pharmacy, University of Arizona, 1703 E. Mabel Street, Tucson, AZ 85721, USA Department of Chemistry, University of Arizona, Tucson, AZ 85721, USA BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA The Arizona Cancer Center, Tucson, AZ 85724, USA yang@pharmacy.arizona.edu.
University of Arizona · USArizona Oncology · USEmory University · US

Funding

Development and Testing of ERE-Targeting Molecules for Breast Cancer TherapyR01CA129424 · NCI · EMORY UNIVERSITY · PI SIDELL, NEIL · 2008 to 2011
$1.3M
G-quadruplexes formed in human oncogene promoters and their drug complexesR01CA122952 · NCI · UNIVERSITY OF ARIZONA · PI YANG, DANZHOU · 2007 to 2011
$875k
DNA TOPOISOMERASE I TARGET INTERACTIONS OF CAMPTOTHECINSK01CA083886 · NCI · UNIVERSITY OF KENTUCKY · PI YANG, DANZHOU · 2000 to 2004
$691k
NCI NIH HHS K01 CA083886NCI NIH HHS R01 CA122952NCI NIH HHS R01 CA129424
6 · The paper itself

Abstract

XR5944, a deoxyribonucleic acid (DNA) bis-intercalator with potent anticancer activity, can bind the estrogen response element (ERE) sequence to inhibit estrogen receptor-α activities. This novel mechanism of action may be useful for overcoming drug resistance to currently available antiestrogen treatments, all of which target the hormone-receptor complex. Here we report the nuclear magnetic resonance solution structure of the 2:1 complex of XR5944 with the naturally occurring TFF1-ERE, which exhibits important and unexpected features. In both drug-DNA complexes, XR5944 binds strongly at one intercalation site but weakly at the second site. The sites of intercalation within a native promoter sequence appear to be context and sequence dependent. The binding of one drug molecule influences the binding site of the second. Our structures underscore the fact that the DNA binding of a bis-intercalator is directional and different from the simple addition of two single intercalation sites. Our study suggests that improved XR5944 bis-intercalators targeting ERE may be designed through optimization of aminoalkyl linker and intercalation moieties at the weak binding sites.

Indexed as

Antineoplastic AgentsBase SequenceBinding SitesHumansIntercalating AgentsMagnetic Resonance SpectroscopyModels, MolecularNucleic Acid ConformationOligonucleotidesPhenazinesResponse ElementsSolutionsTrefoil Factor-1Tumor Suppressor ProteinsAntineoplastic AgentsIntercalating AgentsOligonucleotidesPhenazinesSolutionsTFF1 protein, humanTrefoil Factor-1Tumor Suppressor ProteinsXR5944

Identifiers

PMID24711371
PMCPMC4027214
OpenAlexW2133815682

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.