Evidence map›Paper›PMID 24710523›Full record

ArticlePloS one2014

Top-down proteomics with mass spectrometry imaging: a pilot study towards discovery of biomarkers for neurodevelopmental disorders.

Hui Ye, Rakesh Mandal, Adam Catherman, Paul M Thomas, Neil L Kelleher, Chrysanthy Ikonomidou, Lingjun Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Proteoform-Selective Imaging of Tissues Using Mass Spectrometry.Angewandte Chemie (International ed. in English) · 2022
    Article
  3. Review
  4. Article
  5. Imaging Isomers on a Biological Surface: A Review.Mass spectrometry (Tokyo, Japan) · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Progress in Top-Down Proteomics and the Analysis of Proteoforms.Annual review of analytical chemistry (Palo Alto, Calif.) · 2016
    Review
  14. Article
  15. Review
  16. Proteomics Research in Schizophrenia.Frontiers in cellular neuroscience · 2016
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Hui YeState Key Laboratory of Natural Medicines, Key Lab of Drug Metabolism and Pharmacokinetics, China Pharmaceutical University, Nanjing, PR China; Department of Pharmaceutical Analysis, China Pharmaceutical University, Nanjing, PR China; School of Pharmacy, University of Wisconsin Madison, Madison, Wisconsin, United States of America.
Rakesh MandalDepartment of Neurology, University of Wisconsin Madison, Madison, Wisconsin, United States of America.
Adam CathermanProteomics Center of Excellence, Northwestern University, Evanston, Illinois, United States of America.
Paul M ThomasProteomics Center of Excellence, Northwestern University, Evanston, Illinois, United States of America.
Neil L KelleherProteomics Center of Excellence, Northwestern University, Evanston, Illinois, United States of America.
Chrysanthy IkonomidouDepartment of Neurology, University of Wisconsin Madison, Madison, Wisconsin, United States of America.
Lingjun LiSchool of Pharmacy, University of Wisconsin Madison, Madison, Wisconsin, United States of America; Department of Chemistry, University of Wisconsin Madison, Madison, Wisconsin, United States of America.
Northwestern University · USUniversity of Wisconsin–Madison · USChina Pharmaceutical University · CN

Funding

WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI DAVIDSON, RICHARD J · 1985 to 2015
$25.2M
The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Elena V Romanova · 2004 to 2026
$24.9M
Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
Eukaryotic Post-Translational ModificationsR01GM067193 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2015
$4.0M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
NCRR NIH HHS S10 RR029531NICHD NIH HHS P30 HD003352NICHD NIH HHS P30 HD03352NIDA NIH HHS P30 DA018310NIDDK NIH HHS R01 DK071801NIDDK NIH HHS R01DK071801NIGMS NIH HHS GM067193NIGMS NIH HHS R01 GM067193
6 · The paper itself

Abstract

In the developing mammalian brain, inhibition of NMDA receptor can induce widespread neuroapoptosis, inhibit neurogenesis and cause impairment of learning and memory. Although some mechanistic insights into adverse neurological actions of these NMDA receptor antagonists exist, our understanding of the full spectrum of developmental events affected by early exposure to these chemical agents in the brain is still limited. Here we attempt to gain insights into the impact of pharmacologically induced excitatory/inhibitory imbalance in infancy on the brain proteome using mass spectrometric imaging (MSI). Our goal was to study changes in protein expression in postnatal day 10 (P10) rat brains following neonatal exposure to the NMDA receptor antagonist dizocilpine (MK801). Analysis of rat brains exposed to vehicle or MK801 and comparison of their MALDI MS images revealed differential relative abundances of several proteins. We then identified these markers such as ubiquitin, purkinje cell protein 4 (PEP-19), cytochrome c oxidase subunits and calmodulin, by a combination of reversed-phase (RP) HPLC fractionation and top-down tandem MS platform. More in-depth large scale study along with validation experiments will be carried out in the future. Overall, our findings indicate that a brief neonatal exposure to a compound that alters excitatory/inhibitory balance in the brain has a long term effect on protein expression patterns during subsequent development, highlighting the utility of MALDI-MSI as a discovery tool for potential biomarkers.

Indexed as

Mass SpectrometryProteomicsAnimalsAnimals, NewbornBiomarkersBrainBrain ChemistryBrain DiseasesDizocilpine MaleateExcitatory Amino Acid AntagonistsGene Expression RegulationNerve Tissue ProteinsRatsRats, WistarBiomarkersDizocilpine MaleateExcitatory Amino Acid AntagonistsNerve Tissue Proteins

Identifiers

PMID24710523
PMCPMC3978070
OpenAlexW1976185324

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.