Evidence map›Paper›PMID 24710002›Full record

ArticlePloS one2014

Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials.

Naraporn Somboonna, Alisa Wilantho, Kruawun Jankaew, Anunchai Assawamakin, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Naraporn SomboonnaDepartment of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.
Alisa WilanthoGenome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand.
Kruawun JankaewDepartment of Geology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.
Anunchai AssawamakinDepartment of Pharmacology, Faculty of Pharmacy, Mahidol University, Bangkok, Thailand.
Duangjai SangsrakruGenome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand.
Sithichoke TangphatsornruangGenome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand.
Sissades TongsimaGenome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effects of tsunamis on microbial ecologies have been ill-defined, especially in Phang Nga province, Thailand. This ecosystem was catastrophically impacted by the 2004 Indian Ocean tsunami as well as the 600 year-old tsunami in Phra Thong island, Phang Nga province. No study has been conducted to elucidate their effects on microbial ecology. This study represents the first to elucidate their effects on microbial ecology. We utilized metagenomics with 16S and 18S rDNA-barcoded pyrosequencing to obtain prokaryotic and eukaryotic profiles for this terrestrial site, tsunami affected (S1), as well as a parallel unaffected terrestrial site, non-tsunami affected (S2). S1 demonstrated unique microbial community patterns than S2. The dendrogram constructed using the prokaryotic profiles supported the unique S1 microbial communities. S1 contained more proportions of archaea and bacteria domains, specifically species belonging to Bacteroidetes became more frequent, in replacing of the other typical floras like Proteobacteria, Acidobacteria and Basidiomycota. Pathogenic microbes, including Acinetobacter haemolyticus, Flavobacterium spp. and Photobacterium spp., were also found frequently in S1. Furthermore, different metabolic potentials highlighted this microbial community change could impact the functional ecology of the site. Moreover, the habitat prediction based on percent of species indicators for marine, brackish, freshwater and terrestrial niches pointed the S1 to largely comprise marine habitat indicating-species.

Indexed as

Ecological and Environmental PhenomenaMicrobiotaTsunamisBiodiversityEcosystemMetagenomicsThailand

Identifiers

PMID24710002
PMCPMC3978030

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.