Evidence map›Paper›PMID 24709693›Full record

ArticleThe pharmacogenomics journal2014

Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.

J Cobb, E Cule, H Moncrieffe, A Hinks, S Ursu, F Patrick, L Kassoumeri, E Flynn, M Bulatović, N Wulffraat and 14 more

Open access · hybridAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Article
  7. Article
  8. Article
  9. Methotrexate an Old Drug with New Tricks.International journal of molecular sciences · 2019
    Review
  10. Review
  11. ThePharmacogenomics · 2019
    Review
  12. Article
  13. Association ofACR open rheumatology · 2019
    Article
  14. Article
  15. Article
  16. Immunomics in Pediatric Rheumatic Diseases.Frontiers in medicine · 2019
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 4 countries.

J Cobb1] Arthritis Research UK Centre for Genetics and Genomics, Institute of Inflammation and Repair, Faculty of Medical and Human Sciences, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK [2] NIHR Manchester Musculoskeletal Biomedical Research Unit, Central Manchester National Health Service Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.ORCID 0000000227603114
E CuleDepartment of Epidemiology and Biostatistics, Imperial College London, London, UK.
H MoncrieffeRheumatology Unit, UCL Institute of Child Health, London, UK.
A HinksArthritis Research UK Centre for Genetics and Genomics, Institute of Inflammation and Repair, Faculty of Medical and Human Sciences, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
S UrsuRheumatology Unit, UCL Institute of Child Health, London, UK.
F PatrickRheumatology Unit, UCL Institute of Child Health, London, UK.
L KassoumeriRheumatology Unit, UCL Institute of Child Health, London, UK.
E FlynnArthritis Research UK Centre for Genetics and Genomics, Institute of Inflammation and Repair, Faculty of Medical and Human Sciences, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
M BulatovićDepartment of Paediatric Immunology, University Medical Centre Utrecht, Wilhelmina Children's Hospital, Utrecht, The Netherlands.
N WulffraatDepartment of Paediatric Immunology, University Medical Centre Utrecht, Wilhelmina Children's Hospital, Utrecht, The Netherlands.
B van ZelstDepartment of Clinical Chemistry, Erasmus University Medical Centre, Rotterdam, The Netherlands.
R de JongeDepartment of Clinical Chemistry, Erasmus University Medical Centre, Rotterdam, The Netherlands.
M BohmFirst Faculty of Medicine and General Faculty Hospital, Charles University in Prague, Praha, Czech Republic.
P DolezalovaFirst Faculty of Medicine and General Faculty Hospital, Charles University in Prague, Praha, Czech Republic.
S HiraniCentre for Health Services Research, School of Health Sciences, City University London, London, UK.
S NewmanCentre for Health Services Research, School of Health Sciences, City University London, London, UK.
P WhitworthInstitute of Child Health, Birmingham Children's Hospital, Birmingham, UK.
T R SouthwoodInstitute of Child Health, Birmingham Children's Hospital, Birmingham, UK.
M De IorioDepartment of Statistical Sciences, University College London, London, UK.
Childhood Arthritis Response to Medication Study (CHARMS)
Childhood Arthritis Prospective Study (CAPS)
BSPAR study group
L R Wedderburn1] Rheumatology Unit, UCL Institute of Child Health, London, UK [2] Arthritis Research UK Centre for Adolescent Rheumatology, UCL Institute of Child Health, London, UK.
W Thomson1] Arthritis Research UK Centre for Genetics and Genomics, Institute of Inflammation and Repair, Faculty of Medical and Human Sciences, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK [2] NIHR Manchester Musculoskeletal Biomedical Research Unit, Central Manchester National Health Service Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
Manchester Academic Health Science Centre · GBUniversity College London · GBCity, University of London · GBBirmingham Children's Hospital · GBCharles University · CZWilhelmina Children's Hospital · NLErasmus University Rotterdam · NLNational Health Service · GB

Funding

Arthritis Research UK 17552Arthritis Research UK 20164Arthritis Research UK 20542Department of Health MANMKBRU-2012-1Medical Research Council MR/M004600/1Versus Arthritis 20542
6 · The paper itself

Abstract

Clinical response to methotrexate (MTX) treatment for children with juvenile idiopathic arthritis (JIA) displays considerable heterogeneity. Currently, there are no reliable predictors to identify non-responders: earlier identification could lead to a targeted treatment. We genotyped 759 JIA cases from the UK, the Netherlands and Czech Republic. Clinical variables were measured at baseline and 6 months after start of the treatment. In Phase I analysis, samples were analysed for the association with MTX response using ordinal regression of ACR-pedi categories and linear regression of change in clinical variables, and identified 31 genetic regions (P<0.001). Phase II analysis increased SNP density in the most strongly associated regions, identifying 14 regions (P<1 × 10(-5)): three contain genes of particular biological interest (ZMIZ1, TGIF1 and CFTR). These data suggest a role for novel pathways in MTX response and further investigations within associated regions will help to reach our goal of predicting response to MTX in JIA.

Indexed as

Arthritis, JuvenileChildChild, PreschoolCohort StudiesFemaleHumansMaleMethotrexatePolymorphism, Single NucleotideMethotrexate

Identifiers

PMID24709693
PMCPMC4091986
OpenAlexW2152571908

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.