Evidence map›Paper›PMID 24709477›Full record

ArticleMutation research

Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system.

Christopher J Troll, Suraj Adhikary, Marie Cueff, Ileena Mitra, Brandt F Eichman, Manel Camps

Open access · greenAbstract read
In one paragraph

Article in Mutation research. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christopher J TrollDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, USA.
Suraj AdhikaryDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Marie CueffDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, USA.
Ileena MitraDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, USA.
Brandt F EichmanDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Manel CampsDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, USA. Electronic address: mcamps@ucsc.edu.
University of California, Santa Cruz · USVanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Mechanisms of selective excision and oxidative repair of alkylated DNAR01ES019625 · NIEHS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CAMPS, MANEL · 2011 to 2015
$1.7M
Creation of AlkB Mutants for Protection of Bone MarrowK08CA116429 · NCI · UNIVERSITY OF WASHINGTON · PI CAMPS, MANEL · 2006 to 2010
$657k
NCI NIH HHS K08 CA116429NCI NIH HHS K08CA116429NCI NIH HHS P30 CA068485NCI NIH HHS P30CA068485NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P30ES000267NIEHS NIH HHS R01 ES019625NIEHS NIH HHS R01ES019625
6 · The paper itself

Abstract

DNA glycosylases carry out the first step of base excision repair by removing damaged bases from DNA. The N3-methyladenine (3MeA) DNA glycosylases specialize in alkylation repair and are either constitutively expressed or induced by exposure to alkylating agents. To study the functional and evolutionary significance of constitutive versus inducible expression, we expressed two closely related yeast 3MeA DNA glycosylases - inducible Saccharomyces cerevisiae MAG and constitutive S. pombe Mag1 - in a glycosylase-deficient Escherichia coli strain. In both cases, constitutive expression conferred resistance to alkylating agent exposure. However, in the absence of exogenous alkylation, high levels of expression of both glycosylases were deleterious. We attribute this toxicity to excessive glycosylase activity, since suppressing spMag1 expression correlated with improved growth in liquid culture, and spMag1 mutants exhibiting decreased glycosylase activity showed improved growth and viability. Selection of a random spMag1 mutant library for increased survival in the presence of exogenous alkylation resulted in the selection of hypomorphic mutants, providing evidence for the presence of a genetic barrier to the evolution of enhanced glycosylase activity when constitutively expressed. We also show that low levels of 3MeA glycosylase expression improve fitness in our glycosylase-deficient host, implying that 3MeA glycosylase activity is likely necessary for repair of endogenous lesions. These findings suggest that 3MeA glycosylase activity is evolutionarily conserved for repair of endogenously produced alkyl lesions, and that inducible expression represents a common strategy to rectify deleterious effects of excessive 3MeA activity in the absence of exogenous alkylation challenge.

Indexed as

DNA RepairGenetic Complementation TestAlkylationDNA GlycosylasesEscherichia coliMutationSaccharomyces cerevisiaeSchizosaccharomycesSchizosaccharomyces pombe ProteinsDNA GlycosylasesMag1 protein, S pombeSchizosaccharomyces pombe Proteins3MeAAdaptive responseAlkylationDirected evolutionGlycosylase

Identifiers

PMID24709477
PMCPMC4195818
OpenAlexW2104601635

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.