Evidence map›Paper›PMID 24708151›Full record

ArticleBMC genomics2014

A functional screen for copper homeostasis genes identifies a pharmacologically tractable cellular system.

Ulrich Schlecht, Sundari Suresh, Weihong Xu, Ana Maria Aparicio, Angela Chu, Michael J Proctor, Ronald W Davis, Curt Scharfe, Robert P St Onge

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Reversible binding of divalent cations toFrontiers in molecular biosciences · 2023
    Review
  4. Article
  5. Yeast as a Model to Find New Drugs and Drug Targets forInternational journal of molecular sciences · 2022
    Review
  6. Improving carotenoid production in recombinant yeast,Engineering in life sciences · 2022
    Article
  7. Article
  8. Article
  9. Targeting Copper Homeostasis Improves Functioning ofInternational journal of molecular sciences · 2021
    Article
  10. Gene Loss Predictably Drives Evolutionary Adaptation.Molecular biology and evolution · 2020
    Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ulrich Schlecht
Sundari Suresh
Weihong Xu
Ana Maria Aparicio
Angela Chu
Michael J Proctor
Ronald W Davis
Curt Scharfe
Robert P St OngeStanford Genome Technology Center, Department of Biochemistry, Stanford University, 855 S California Avenue, Palo Alto, CA 94304, USA. bstonge@stanford.edu.
Stanford University · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
Technology to Identify and Assay Chemical Genomic ProbesR01HG003317 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2004 to 2012
$9.1M
Discovery of Biomarkers in Human Mitochondrial DiseasesR01EY016240 · NEI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2006 to 2011
$3.6M
Identification of Small-Molecule Inhibitors of Protein-Protein InteractionsR21HG005785 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2010 to 2011
$440k
Noninvasive prenatal diagnosis using targeted DNA capture and sequencing.R21HD071446 · NICHD · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2011 to 2012
$435k
NEI NIH HHS R01EY016240NHGRI NIH HHS P01HG000205NHGRI NIH HHS R01HG003317NHGRI NIH HHS R21HG005785NICHD NIH HHS R21HD071446
6 · The paper itself

Abstract

backgroundCopper is essential for the survival of aerobic organisms. If copper is not properly regulated in the body however, it can be extremely cytotoxic and genetic mutations that compromise copper homeostasis result in severe clinical phenotypes. Understanding how cells maintain optimal copper levels is therefore highly relevant to human health.

resultsWe found that addition of copper (Cu) to culture medium leads to increased respiratory growth of yeast, a phenotype which we then systematically and quantitatively measured in 5050 homozygous diploid deletion strains. Cu's positive effect on respiratory growth was quantitatively reduced in deletion strains representing 73 different genes, the function of which identify increased iron uptake as a cause of the increase in growth rate. Conversely, these effects were enhanced in strains representing 93 genes. Many of these strains exhibited respiratory defects that were specifically rescued by supplementing the growth medium with Cu. Among the genes identified are known and direct regulators of copper homeostasis, genes required to maintain low vacuolar pH, and genes where evidence supporting a functional link with Cu has been heretofore lacking. Roughly half of the genes are conserved in man, and several of these are associated with Mendelian disorders, including the Cu-imbalance syndromes Menkes and Wilson's disease. We additionally demonstrate that pharmacological agents, including the approved drug disulfiram, can rescue Cu-deficiencies of both environmental and genetic origin.

conclusionsA functional screen in yeast has expanded the list of genes required for Cu-dependent fitness, revealing a complex cellular system with implications for human health. Respiratory fitness defects arising from perturbations in this system can be corrected with pharmacological agents that increase intracellular copper concentrations.

Indexed as

Cell RespirationCluster AnalysisCopperCulture MediaDisulfiramGene Expression ProfilingGene Expression Regulation, FungalGene Regulatory NetworksGenetic Association StudiesGenetic Predisposition to DiseaseHomeostasisHumansHydrazinesHydrogen-Ion ConcentrationPhenotypeVacuolesCopperCulture MediaDisulfiramelesclomolHydrazines

Identifiers

PMID24708151
PMCPMC4023593
OpenAlexW2050997996

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.