ArticleDatabase : the journal of biological databases and curation2014
FixPred: a resource for correction of erroneous protein sequences.
Article in Database : the journal of biological databases and curation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Revised eutherian gene collections.BMC genomic data · 2022Article
- Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes.BMC bioinformatics · 2020Article
- Detecting and correcting misclassified sequences in the large-scale public databases.Bioinformatics (Oxford, England) · 2020Article
- Article
- Improved strategy for the curation and classification of kinases, with broad applicability to other eukaryotic protein groups.Scientific reports · 2018Article
- Putative extremely high rate of proteome innovation in lancelets might be explained by high rate of gene prediction errors.Scientific reports · 2016Article
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Authors and funding
2 authors.
Funding
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Abstract
Protein databases are heavily contaminated with erroneous (mispredicted, abnormal and incomplete) sequences and these erroneous data significantly distort the conclusions drawn from genome-scale protein sequence analyses. In our earlier work we described the MisPred resource that serves to identify erroneous sequences; here we present the FixPred computational pipeline that automatically corrects sequences identified by MisPred as erroneous. The current version of the associated FixPred database contains corrected UniProtKB/Swiss-Prot and NCBI/RefSeq sequences from Homo sapiens, Mus musculus, Rattus norvegicus, Monodelphis domestica, Gallus gallus, Xenopus tropicalis, Danio rerio, Fugu rubripes, Ciona intestinalis, Branchostoma floridae, Drosophila melanogaster and Caenorhabditis elegans; future releases of the FixPred database will include corrected sequences of additional Metazoan species. The FixPred computational pipeline and database (http://www.fixpred.com) are easily accessible through a simple web interface coupled to a powerful query engine and a standard web service. The content is completely or partially downloadable in a variety of formats. Database URL: http://www.fixpred.com.
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