Evidence map›Paper›PMID 24705161›Full record

ArticleGenes2013

High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1.

Maureen Peterson, Vicki L Chandler, Giovanni Bosco

Open access · goldAbstract read
In one paragraph

Article in Genes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Maureen PetersonDepartment of Genetics, Geisel School of Medicine, Dartmouth College, Hanover New Hampshire, USA. Maureen.Peterson@dartmouth.edu.
Vicki L ChandlerBio5 Institute, University of Arizona, Tucson Arizona, USA. Vicki.chandler@moore.org.
Giovanni BoscoDepartment of Genetics, Geisel School of Medicine, Dartmouth College, Hanover New Hampshire, USA. Giovanni.Bosco@dartmouth.edu.
Dartmouth College · USUniversity of Arizona · US

Funding

NIH Director's Pioneer Award (RMI)DP1OD000575 · OD · UNIVERSITY OF ARIZONA · PI CHANDLER, VICKI LYNN · 2005 to 2009
$3.7M
Developmental control of replication by Drosophila RBR01GM069462 · NIGMS · UNIVERSITY OF ARIZONA · PI BOSCO, GIOVANNI · 2004 to 2012
$2.5M
NIGMS NIH HHS R01 GM069462NIH HHS DP1 OD000575
6 · The paper itself

Abstract

Short Interspersed Nuclear Elements (SINEs) are non-autonomous retrotransposons that comprise a large fraction of the human genome. SINEs are demethylated in human disease, but whether SINEs become transcriptionally induced and how the resulting transcripts may affect the expression of protein coding genes is unknown. Here, we show that downregulation of the mRNA of the tumor suppressor gene BRCA1 is associated with increased transcription of SINEs and production of sense and antisense SINE small RNAs. We find that BRCA1 mRNA is post-transcriptionally down-regulated in a Dicer and Drosha dependent manner and that expression of a SINE inverted repeat with sequence identity to a BRCA1 intron is sufficient for downregulation of BRCA1 mRNA. These observations suggest that transcriptional activation of SINEs could contribute to a novel mechanism of RNA mediated post-transcriptional silencing of human genes.

Identifiers

PMID24705161
PMCPMC3899967
OpenAlexW1975091564

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.