Evidence map›Paper›PMID 24705077›Full record

ArticleGenes2012

Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and Accessory Genomes provide Insight into Niche Adaptation.

Florence Wisniewski-Dyé, Luis Lozano, Erika Acosta-Cruz, Stéphanie Borland, Benoît Drogue, Claire Prigent-Combaret, Zoé Rouy, Valérie Barbe, Alberto Mendoza Herrera, Victor González and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Microorganisms · 2022
    Review
  6. Article
  7. Review
  8. Potential ofMicroorganisms · 2021
    Article
  9. Identification of a small set of genes commonly regulated in rice roots in response to beneficial rhizobacteria.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  10. Article
  11. Review
  12. Applied and environmental microbiology · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Defining the Genetic Basis of Plant⁻Endophytic Bacteria Interactions.International journal of molecular sciences · 2019
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Florence Wisniewski-DyéUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. florence.wisniewski@univ-lyon1.fr.
Luis LozanoCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, AP565-A Cuernavaca, Morelos 62210, México. llozano@ccg.unam.mx.
Erika Acosta-CruzUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. eyacosta@yahoo.com.
Stéphanie BorlandUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. stephanie.borland@hotmail.fr.
Benoît DrogueUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. benoit.drogue@gmail.com.
Claire Prigent-CombaretUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. claire.prigent-combaret@univ-lyon1.fr.
Zoé RouyLaboratoire d'Analyse Bioinformatique en Génomique et Métabolisme CNRS UMR8030, France. zrouy@genoscope.cns.fr.
Valérie BarbeInstitut de Génomique, CEA, Génoscope, 2 rue Gaston Crémieux, 91057 Evry, France. vbarbe@genoscope.cns.fr.
Alberto Mendoza HerreraCentro de Biotecnología Genómica, Instituto politécnico Nacional, 88710 Reynosa, Tamaulipas, México. amendozah@ipn.mx.
Victor GonzálezCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, AP565-A Cuernavaca, Morelos 62210, México. vgonzal@ccg.unam.mx.
Patrick MavinguiUniversité de Lyon, UMR 5557 CNRS, USC 1193 INRA, VetAgro Sup Ecologie Microbienne, Villeurbanne 69622, France. patrick.mavingui@univ-lyon1.fr.
Centre National de la Recherche Scientifique · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversidad Nacional Autónoma de México · MXUniversité Claude Bernard Lyon 1 · FRVetAgro Sup · FRInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria of the genus Azospirillum colonize roots of important cereals and grasses, and promote plant growth by several mechanisms, notably phytohormone synthesis. The genomes of several Azospirillum strains belonging to different species, isolated from various host plants and locations, were recently sequenced and published. In this study, an additional genome of an A. brasilense strain, isolated from maize grown on an alkaline soil in the northeast of Mexico, strain CBG497, was obtained. Comparative genomic analyses were performed on this new genome and three other genomes (A. brasilense Sp245, A. lipoferum 4B and Azospirillum sp. B510). The Azospirillum core genome was established and consists of 2,328 proteins, representing between 30% to 38% of the total encoded proteins within a genome. It is mainly chromosomally-encoded and contains 74% of genes of ancestral origin shared with some aquatic relatives. The non-ancestral part of the core genome is enriched in genes involved in signal transduction, in transport and in metabolism of carbohydrates and amino-acids, and in surface properties features linked to adaptation in fluctuating environments, such as soil and rhizosphere. Many genes involved in colonization of plant roots, plant-growth promotion (such as those involved in phytohormone biosynthesis), and properties involved in rhizosphere adaptation (such as catabolism of phenolic compounds, uptake of iron) are restricted to a particular strain and/or species, strongly suggesting niche-specific adaptation.

Identifiers

PMID24705077
PMCPMC3899980
OpenAlexW2162502135

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.