Evidence map›Paper›PMID 24704843›Full record

ArticleGenes2011

Implication of an Aldehyde Dehydrogenase Gene and a Phosphinothricin N-Acetyltransferase Gene in the Diversity of Pseudomonas cichorii Virulence.

Masayuki Tanaka, Ullah Md Wali, Hitoshi Nakayashiki, Tatsuya Fukuda, Hiroyuki Mizumoto, Kouhei Ohnishi, Akinori Kiba, Yasufumi Hikichi

Open access · goldAbstract read
In one paragraph

Article in Genes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Masayuki TanakaLaboratory of Plant Pathology and Biotechnology, Kochi University, Nankoku, Kochi 783-8502, Japan. tanakamasayukikani@yahoo.co.jp.
Ullah Md WaliLaboratory of Plant Pathology and Biotechnology, Kochi University, Nankoku, Kochi 783-8502, Japan. wullahsau@yahoo.com.
Hitoshi NakayashikiLaboratory of Plant Pathology, Kobe University, Kobe, Hyogo 657-8501, Japan. hnakaya@kobe-u.ac.jp.
Tatsuya FukudaFaculty of Agriculture, Kochi University, Nankoku 783-8502, Japan. tfukuda@kochi-u.ac.jp.
Hiroyuki MizumotoLaboratory of Plant Pathology and Biotechnology, Kochi University, Nankoku, Kochi 783-8502, Japan. jm-mizumoto@kochi-u.ac.jp.
Kouhei OhnishiResearch Institute of Molecular Genetics, Kochi University, Nankoku, Kochi 783-8502, Japan. kouheio@kochi-u.ac.jp.
Akinori KibaLaboratory of Plant Pathology and Biotechnology, Kochi University, Nankoku, Kochi 783-8502, Japan. akiba@kochi-u.ac.jp.
Yasufumi HikichiLaboratory of Plant Pathology and Biotechnology, Kochi University, Nankoku, Kochi 783-8502, Japan. yhikichi@kochi-u.ac.jp.
Kōchi University · JPKobe University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas cichorii harbors the hrp genes. hrp-mutants lose their virulence on eggplant but not on lettuce. A phosphinothricin N-acetyltransferase gene (pat) is located between hrpL and an aldehyde dehydrogenase gene (aldH) in the genome of P. cichorii. Comparison of nucleotide sequences and composition of the genes among pseudomonads suggests a common ancestor of hrp and pat between P. cichorii strains and P. viridiflava strains harboring the single hrp pathogenicity island. In contrast, phylogenetic diversification of aldH corresponded to species diversification amongst pseudomonads. In this study, the involvement of aldH and pat in P. cichorii virulence was analyzed. An aldH-deleted mutant (ΔaldH) and a pat-deleted mutant (Δpat) lost their virulence on eggplant but not on lettuce. P. cichorii expressed both genes in eggplant leaves, independent of HrpL, the transcriptional activator for the hrp. Inoculation into Asteraceae species susceptible to P. cichorii showed that the involvement of hrp, pat and aldH in P. cichorii virulence is independent of each other and has no relationship with the phylogeny of Asteraceae species based on the nucleotide sequences of ndhF and rbcL. It is thus thought that not only the hrp genes but also pat and aldH are implicated in the diversity of P. cichorii virulence on susceptible host plant species.

Identifiers

PMID24704843
PMCPMC3899961
OpenAlexW2107190876

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.