Evidence map›Paper›PMID 24704842›Full record

ArticleGenes2011

Comparative genomics of aeschynomene symbionts: insights into the ecological lifestyle of nod-independent photosynthetic bradyrhizobia.

Damien Mornico, Lucie Miché, Gilles Béna, Nico Nouwen, André Verméglio, David Vallenet, Alexander A T Smith, Eric Giraud, Claudine Médigue, Lionel Moulin

Abstract read
In one paragraph

Article in Genes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Permanent draft genome sequence ofJournal of genomics · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Damien MornicoIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. dmornico@genoscope.cns.fr.
Lucie MichéIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. lucie.miche@univ-provence.fr.
Gilles BénaIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. gilles.bena@ird.fr.
Nico NouwenIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. nico.nouwen@ird.fr.
André VerméglioLaboratoire de Bioénergétique Cellulaire, CEA Cadarache, DSV, IBEB, 13108 Saint Paul-lez-Durance, France. andre.vermeglio@cea.fr.
David VallenetLABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France. vallenet@genoscope.cns.fr.
Alexander A T SmithLABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France. asmith@genoscope.cns.fr.
Eric GiraudIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. eric.giraud@ird.fr.
Claudine MédigueLABGeM, CEA-Genoscope & CNRS-UMR8030, 91057 Evry, France. cmedigue@genoscope.cns.fr.
Lionel MoulinIRD-LSTM, UMR113, Campus de Baillarguet, 34398 Montpellier cedex 5, France. lionel.moulin@ird.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tropical aquatic species of the legume genus Aeschynomene are stem- and root-nodulated by bradyrhizobia strains that exhibit atypical features such as photosynthetic capacities or the use of a nod gene-dependent (ND) or a nod gene-independent (NI) pathway to enter into symbiosis with legumes. In this study we used a comparative genomics approach on nine Aeschynomene symbionts representative of their phylogenetic diversity. We produced draft genomes of bradyrhizobial strains representing different phenotypes: five NI photosynthetic strains (STM3809, ORS375, STM3847, STM4509 and STM4523) in addition to the previously sequenced ORS278 and BTAi1 genomes, one photosynthetic strain ORS285 hosting both ND and NI symbiotic systems, and one NI non-photosynthetic strain (STM3843). Comparative genomics allowed us to infer the core, pan and dispensable genomes of Aeschynomene bradyrhizobia, and to detect specific genes and their location in Genomic Islands (GI). Specific gene sets linked to photosynthetic and NI/ND abilities were identified, and are currently being studied in functional analyses.

Identifiers

PMID24704842
PMCPMC3899966

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.