Evidence map›Paper›PMID 24704786›Full record

ArticleNature structural & molecular biology2014

Structural basis of recognition of interferon-α receptor by tyrosine kinase 2.

Heidi J A Wallweber, Christine Tam, Yvonne Franke, Melissa A Starovasnik, Patrick J Lupardus

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it, 145 citations in OpenAlex.

  1. JAK inhibitors and COVID-19.Journal for immunotherapy of cancer · 2022
    Pooled it
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Structural basis of MPL activation by thrombopoietin.Blood vessels, thrombosis & hemostasis · 2024
    Article
  13. Article
  14. Structure-function of type I and III interferons.Current opinion in immunology · 2024
    Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Heidi J A WallweberDepartment of Structural Biology, Genentech, South San Francisco, California, USA.
Christine TamDepartment of Structural Biology, Genentech, South San Francisco, California, USA.
Yvonne FrankeDepartment of Structural Biology, Genentech, South San Francisco, California, USA.
Melissa A StarovasnikDepartment of Structural Biology, Genentech, South San Francisco, California, USA.
Patrick J LupardusDepartment of Structural Biology, Genentech, South San Francisco, California, USA.

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393
6 · The paper itself

Abstract

Tyrosine kinase 2 (TYK2) is a member of the Janus kinase (JAK) family of nonreceptor tyrosine kinases, which are essential for proper signaling in immune responses and development. Here we present a 2.0-Å-resolution crystal structure of a receptor-binding fragment of human TYK2, encompassing the FERM and SH2 domains, in complex with a so-called 'box2'-containing intracellular peptide motif from the interferon-α receptor chain 1 (IFNAR1). The TYK2-IFNAR1 interface reveals an unexpected receptor-binding mode that mimics a SH2 domain-phosphopeptide interaction, with a glutamate replacing the canonical phosphotyrosine residue. This structure provides the first view, to our knowledge, of a JAK in complex with its cognate receptor and defines the molecular logic through which JAKs have evolved to interact with divergent receptor sequences.

Indexed as

Amino Acid SequenceBinding SitesConserved SequenceCrystallography, X-RayHumansInterferon-alphaModels, MolecularMolecular Sequence DataProtein Structure, TertiaryTYK2 KinaseInterferon-alphaTYK2 Kinase

Identifiers

PMID24704786
PMCPMC4161281
OpenAlexW1972195237

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.