Evidence map›Paper›PMID 24702954›Full record

ArticleAmerican journal of human genetics2014

Rare variants in NR2F2 cause congenital heart defects in humans.

Saeed Al Turki, Ashok K Manickaraj, Catherine L Mercer, Sebastian S Gerety, Marc-Phillip Hitz, Sarah Lindsay, Lisa C A D'Alessandro, G Jawahar Swaminathan, Jamie Bentham, Anne-Karin Arndt and 31 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 185 citations in OpenAlex.

  1. Article
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  11. A novel HPβCD-Cu(DDC)Scientific reports · 2025
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  14. Zebrafish Congenital Heart Disease Models: Opportunities and Challenges.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Article
  17. Review
  18. Human Genetics of Ventricular Septal Defect.Advances in experimental medicine and biology · 2024
    Article
  19. Human Genetics of Atrioventricular Septal Defect.Advances in experimental medicine and biology · 2024
    Review
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

41 authors at 19 institutions in 7 countries.

Saeed Al TurkiWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK; Department of Pathology, King Abdulaziz Medical City, P.O. Box 22490, Riyadh 11426, Saudi Arabia.
Ashok K ManickarajDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada.
Catherine L MercerHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, UK.
Sebastian S GeretyWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Marc-Phillip HitzWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Sarah LindsayWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Lisa C A D'AlessandroDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada.
G Jawahar SwaminathanWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Jamie BenthamDepartment of Cardiology, Boston Children's Hospital, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02459, USA.
Anne-Karin ArndtCardiovascular Division, Brigham and Women's Hospital, Harvard Medical School, and Harvard Stem Cell Institute, Boston, MA 02115, USA; Department of Congenital Heart Disease and Pediatric Cardiology, University Hospital Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany.
Jacoba Louw
Jacoba LowCentre for Human Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium; Pediatric Cardiology Unit, University Hospital Leuven, 3000 Leuven, Belgium.
Jeroen BreckpotCentre for Human Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium.
Marc GewilligPediatric Cardiology Unit, University Hospital Leuven, 3000 Leuven, Belgium.
Bernard ThienpontCentre for Human Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium.
Hashim Abdul-KhaliqDepartment of Pediatric Cardiology, Saarland University Hospital, 66421 Homburg, Germany; Competence Network for Congenital Heart Defects.
Christine HarnackExperimental and Clinical Research Center (ECRC), Charité Medical Faculty and Max-Delbruck-Center for Molecular Medicine, 13125 Berlin, Germany.
Kirstin HoffDepartment of Congenital Heart Disease and Pediatric Cardiology, University Hospital Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany; Institute of Human Genetics, Christian-Albrechts University Kiel & University Hospital Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany.
Hans-Heiner KramerDepartment of Congenital Heart Disease and Pediatric Cardiology, University Hospital Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany; Competence Network for Congenital Heart Defects.
Stephan SchubertCompetence Network for Congenital Heart Defects; Department of Congenital Heart Disease and Pediatric Cardiology, Deutsches Herzzentrum Berlin, 13353 Berlin, Germany.
Reiner SiebertInstitute of Human Genetics, Christian-Albrechts University Kiel & University Hospital Schleswig-Holstein, Campus Kiel, 24105 Kiel, Germany.
Okan TokaCompetence Network for Congenital Heart Defects; Department of Pediatric Cardiology, Children's Hospital, Friedrich-Alexander University, 91054 Erlangen, Germany.
Catherine CosgroveRadcliffe Department of Medicine & Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Hugh WatkinsRadcliffe Department of Medicine & Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Anneke M LucassenHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, UK.
Ita M O'KellyHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, UK.
Anthony P SalmonHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, UK.
Frances A Bu'lockEast Midlands Congenital Heart Centre, University Hospitals of Leicester NHS Trust, Leicester LE3 9QP, UK.
Javier Granados-RiveronSchool of Life Sciences, University of Nottingham, Nottingham NG7 2UH, UK.
Kerry SetchfieldSchool of Life Sciences, University of Nottingham, Nottingham NG7 2UH, UK.
Chris ThornboroughEast Midlands Congenital Heart Centre, University Hospitals of Leicester NHS Trust, Leicester LE3 9QP, UK.
J David BrookSchool of Life Sciences, University of Nottingham, Nottingham NG7 2UH, UK.
Barbara MulderHeart Center, Academic Medical Center, 1105AZ Amsterdam, the Netherlands.
Sabine KlaassenCompetence Network for Congenital Heart Defects; Experimental and Clinical Research Center (ECRC), Charité Medical Faculty and Max-Delbruck-Center for Molecular Medicine, 13125 Berlin, Germany; Department of Pediatric Cardiology, Charité University Medicine Berlin,13353 Berlin, Germany.
Shoumo BhattacharyaRadcliffe Department of Medicine & Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Koen DevriendtCentre for Human Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium.
David F FitzpatrickMRC Human Genetics Unit, Institute of Genetic and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
UK10K Consortium
David I WilsonHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, UK.
Seema MitalDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada. Electronic address: seema.mital@sickkids.ca.
Matthew E HurlesWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK. Electronic address: meh@sanger.ac.uk.
Wellcome Sanger Institute · GBKU Leuven · BEAdult Congenital Heart Association · USUniversity of Nottingham · GBUniversity of Southampton · GBHospital for Sick Children · CASouthampton General Hospital · GBUniversity Hospital Schleswig-Holstein · DEUniversity Hospitals of Leicester NHS Trust · GBUniversity of Oxford · GBAcademic Medical Center · NLBoston Children's Hospital · USCentre for Human Genetics · GBCharité - Universitätsmedizin Berlin · DEDeutsches Herzzentrum der Charité · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DEKiel University · DEMRC Institute of Genetics and Molecular Medicine · GBUniversity of Toronto · CA

Funding

Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsUC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2010 to 2010
$14.7M
Northwest Genomics CenterUC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2010 to 2010
$14.0M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectUC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2010 to 2010
$2.6M
WHI Sequencing Project (WHISP)UC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2010 to 2010
$2.4M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsUC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2010 to 2010
$1.5M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsRC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$817k
British Heart Foundation PG/07/045/22690British Heart Foundation RG/07/010/23676British Heart Foundation RG/10/17/28553British Heart Foundation RG/13/10/30376Medical Research Council MC_PC_U127561093Medical Research Council MC_U127561093NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NHLBI NIH HHS UC2 HL102923NHLBI NIH HHS UC2 HL102924NHLBI NIH HHS UC2 HL102925NHLBI NIH HHS UC2 HL102926NHLBI NIH HHS UC2 HL103010Wellcome Trust 090532Wellcome Trust 100140Wellcome Trust WT098051
6 · The paper itself

Abstract

Congenital heart defects (CHDs) are the most common birth defect worldwide and are a leading cause of neonatal mortality. Nonsyndromic atrioventricular septal defects (AVSDs) are an important subtype of CHDs for which the genetic architecture is poorly understood. We performed exome sequencing in 13 parent-offspring trios and 112 unrelated individuals with nonsyndromic AVSDs and identified five rare missense variants (two of which arose de novo) in the highly conserved gene NR2F2, a very significant enrichment (p = 7.7 × 10(-7)) compared to 5,194 control subjects. We identified three additional CHD-affected families with other variants in NR2F2 including a de novo balanced chromosomal translocation, a de novo substitution disrupting a splice donor site, and a 3 bp duplication that cosegregated in a multiplex family. NR2F2 encodes a pleiotropic developmental transcription factor, and decreased dosage of NR2F2 in mice has been shown to result in abnormal development of atrioventricular septa. Via luciferase assays, we showed that all six coding sequence variants observed in individuals significantly alter the activity of NR2F2 on target promoters.

Indexed as

AnimalsBinding SitesCell LineCOUP Transcription Factor IIExomeFemaleHeart Defects, CongenitalHumansMaleMiceMutation, MissensePedigreeProspective StudiesTranscription, GeneticCOUP Transcription Factor IINR2F2 protein, human

Identifiers

PMID24702954
PMCPMC3980509
OpenAlexW2137562589

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.