Evidence map›Paper›PMID 24700353›Full record

ArticleG3 (Bethesda, Md.)2014

Fine mapping reveals that promotion susceptibility locus 1 (Psl1) is a compound locus with multiple genes that modify susceptibility to skin tumor development.

Joe M Angel, Erika L Abel, Penny K Riggs, S Alex McClellan, John DiGiovanni

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Joe M AngelDivision of Pharmacology & Toxicology, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712 jmangel@austin.utexas.edu John.digiovanni@austin.utexas.edu.
Erika L AbelDepartment of Biology, Baylor University, Waco, Texas 76798.
Penny K RiggsDepartment of Animal Science, Texas A&M University, College Station, Texas 77843.
S Alex McClellanDivision of Pharmacology & Toxicology, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712.
John DiGiovanniDivision of Pharmacology & Toxicology, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712 Department of Nutritional Sciences, College of Natural Science, The University of Texas at Austin, Austin, Texas 78712 jmangel@austin.utexas.edu John.digiovanni@austin.utexas.edu.
The University of Texas at Austin · USBaylor University · USTexas A&M University · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Pilot Project ProgramP30ES007784 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RICHIE, ELLEN R · 1996 to 2011
$16.4M
RESEARCH TRAINING IN CARCINOGENESIS &MUTAGENESIST32CA009480 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RICHIE, ELLEN R · 1985 to 2012
$3.0M
Identification of Tumor Promotion Susceptibility GenesR01ES016623 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIGIOVANNI, JOHN · 2009 to 2013
$1.7M
NCI NIH HHS P30 CA016672NCI NIH HHS T32 CA009480NIEHS NIH HHS P30 ES007784NIEHS NIH HHS R01 ES016623
6 · The paper itself

Abstract

Although it is well known that the majority of human cancers occur as the result of exposure to environmental carcinogens, it is clear that not all individuals exposed to a specific environmental carcinogen have the same risk of developing cancer. Considerable evidence indicates that common allelic variants of low-penetrance, tumor susceptibility genes are responsible for this interindividual variation in risk. We previously reported a skin tumor promotion susceptibility locus, Psl1, which maps to the distal portion of chromosome 9, that modified skin tumor promotion susceptibility in the mouse. Furthermore, Psl1 was shown to consist of at least two subloci (i.e., Psl1.1 and Psl1.2) and that glutathione S-transferase alpha 4 (Gsta4), which maps to Psl1.2, is a skin tumor promotion susceptibility gene. Finally, variants of human GSTA4 were found to be associated with risk of nonmelanoma skin cancer. In the current study, a combination of nested and contiguous C57BL/6 congenic mouse strains, each inheriting a different portion of the Psl1 locus from DBA/2, were tested for susceptibility to skin tumor promotion with 12-O-tetradecanoylphorbol-13-acetate. These analyses indicate that Psl1 is a compound locus with at least six genes, including Gsta4, that modify skin tumor promotion susceptibility. More than 550 protein-coding genes map within the Psl1 locus. Fine mapping of the Psl1 locus, along with two-strain haplotype analysis, gene expression analysis, and the identification of genes with amino acid variants, has produced a list of fewer than 25 candidate skin tumor promotion susceptibility genes.

Indexed as

Chromosome MappingGenetic Predisposition to DiseaseMultigene FamilyQuantitative Trait LociAnimalsChromosomes, MammalianFemaleGene Expression Regulation, NeoplasticMaleMiceOpen Reading FramesPolymorphism, Single NucleotideSkin Neoplasmscomplex trait geneticscompound locusPsl1skin tumor promotion susceptibility locustetradecanoylphorbol acetate

Identifiers

PMID24700353
PMCPMC4065250
OpenAlexW2154528610

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.